Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30320 157 / 6e-45 Remorin family protein (.1) AT2G02170 107 / 1e-26 Remorin family protein (.1.2) AT1G67590 73 / 1e-14 Remorin family protein (.1.2) AT1G53860 40 / 0.0007 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023284 [exp] 261 / 1e-84 AT1G30320 422 / 9e-144 Remorin family protein (.1) Lus10015817 [exp] 72 / 3e-14 AT1G67590 280 / 5e-92 Remorin family protein (.1.2) Lus10036996 [exp] 42 / 0.0001 AT1G67590 184 / 2e-57 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358600 [exp] 186 / 1e-55 AT1G30320 448 / 2e-153 Remorin family protein (.1) Potri.010G098000 [exp] 128 / 6e-34 AT2G02170 434 / 2e-148 Remorin family protein (.1.2) Potri.008G144300 [exp] 121 / 1e-31 AT2G02170 431 / 5e-147 Remorin family protein (.1.2) Potri.010G056800 [exp] 82 / 5e-18 AT1G67590 253 / 8e-82 Remorin family protein (.1.2) Potri.008G178300 [exp] 69 / 3e-13 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10038522 pacid=23158163 polypeptide=Lus10038522 locus=Lus10038522.g ID=Lus10038522.BGIv1.0 annot-version=v1.0 ATGCCAATTGCTCTCTCTGCAGTGGTTCCTGTCATAAGATCAGTGTGTATGAGAGACATGGGGACAGAAATGACACCCATTGCTAGTCAAGAGCCATCGA GAACCGGTACGCCAGTTGGGGCAACAACTCCGATTCGCAGCCCGACTACTTCAATGCCCTCCACTCCAAGAGCAGGGGGACCAGCACCGACGCCAACCGA CGAAGATGGGAATTGCTTAAATGAGAATGGCAAGAAGGAACTGAGCGAGGAAGAGCTGAAACTGAAGACTAGGAAGGAGATTGTAGCTCTCGGGGTGAAG CTTGGGAAGATGAACATTGCTGCTTGGGCAAGTAAAGATGATGAGGAGGAAAATAACATTGCTTTTAGTGAAAGAAGAGAAAGGGAGTCACTTGAGCAGA TTGAATTGGAGAAGCGGGCAGCTGCTTGGGAAGAAGCTGAGAAGTCTAAACACACTGCAAGATACAAAAGGGAAGAGATACAAATCCAAGCATGGGAAAG TCAGCAGATAGCAAAGCTGGAAGCCGAGTTGCGAAGAACTGAGGCTCGAGCGGAACGAATGCGAGTGGAAGCTGAAGCGAAGATGGTTAAGAAGATGGCA ATGGCAAGGCAAAGAGCAGAGGAGAGACGAGGAGCAGCTGAGTCGAGGAAGAATCGAGATGCAGAGAGAACAGCAGTGAAAGCTGAATACATCCGGAAAA CGGGTCGGATGCCGTCGAGTTTGATGCAGTATATATGCTGTGGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10038522 pacid=23158163 polypeptide=Lus10038522 locus=Lus10038522.g ID=Lus10038522.BGIv1.0 annot-version=v1.0 MPIALSAVVPVIRSVCMRDMGTEMTPIASQEPSRTGTPVGATTPIRSPTTSMPSTPRAGGPAPTPTDEDGNCLNENGKKELSEEELKLKTRKEIVALGVK LGKMNIAAWASKDDEEENNIAFSERRERESLEQIELEKRAAAWEEAEKSKHTARYKREEIQIQAWESQQIAKLEAELRRTEARAERMRVEAEAKMVKKMA MARQRAEERRGAAESRKNRDAERTAVKAEYIRKTGRMPSSLMQYICCGWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	0	1
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	1.0	0.7676
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	3.5	0.7385
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	4.9	0.7598
AT4G28703			RmlC-like cupins superfamily p...		Lus10025947 [exp]	11.4	0.6614
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	13.9	0.6960
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	17.7	0.7295
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039299 [exp]	19.4	0.6928
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	21.2	0.6667
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10003997 [exp]	23.9	0.6779
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	25.1	0.7154

Compare expression of checked genes

Lus10038522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.