Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34640 558 / 0 HMR, PTAC12 HEMERA, plastid transcriptionally active 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023283 [exp] 874 / 0 AT2G34640 571 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358400 [exp] 617 / 0 AT2G34640 608 / 0.0 HEMERA, plastid transcriptionally active 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038523 pacid=23158226 polypeptide=Lus10038523 locus=Lus10038523.g ID=Lus10038523.BGIv1.0 annot-version=v1.0 ATGGCTTCACTACAAGCAAACTGGATCTATCAAGGTCACACTTCCATATCCGATCGAGGATTGAAGATACCTGTCTCTTCTTACCGATTCCGGACGCAGT TTCAATTCGGCGTTTCTCGAAAGCCTCGGTCACTTCCTCGCCTAAAGTGCGAGAGCGAGGACGAAGAGAAAGGAATCGAGCATGTAAACGTGGAGCGGGC TCCCTACCACAGTTATCTGGACTCGACATCGGGCCAAATTGAGCCGGCGTCCGGCGCTCGTGCCAGCATTCCTGGAGAAGAGTTATGGCCGGAAGGAACT TTAGATCGAGTCAGGGCAGCTAGGGCTCCGGAGCCGACGGGGATATCAACCGGAACGCCGTCGTACGGTCAAAATCCTGGAAGTAGGAGGAGGAAGCACT GGGGATCGGCAGCGGGTTCGGGTTCCGGTGAAGTGATTGAAATGGAAGCCGATTTGGAGACTGAAACCATTGAGGTGGAGGAAGAGGCGAGAGATGAATC ATCGGATTACGTGATTTATGAGGCGGATGAAGATGAGGAAGAGCTCACGGGGTTTGAGCTGGACAAGAAGTTGGGACGCCCTCATCCGTTTATTGATCCG AAGGTGCAGAAGCCGATTGAAGGGATACTTCCTGAGGAAGAACTGTGGTGGAATTGGAAGAGGGATGATAGCGAACAATGGAGCAGGTGGCAAAGGAGGA AGCCTGATTCTGAAACTGTGTTCCTCAAAGCAATGGCTGATAATGGGGATGTAAAGCTCTATGGTGAGCATCCTACGCTGACTGAGACTGCTCTTTACCG ATCCAGGAAGCATCTTTACAAGGAAGAAAGGCTTCAAGCTGAACGAGAGAGACTGGAGAGAATAGGCCCACTGGCGTTTTATTCAGGGTGGGTGAAGAAA TGGAATAGAGACACTTCACGGGAAGCAGTACAGAAGCATTATGAAGAGACTGGTGAAGATGAAACCTTCCAACTAATGGAAATGTTCAGTTATCAAACAG ATCGAGAGTATCGTATCATGATGGGCACTGATGTTCGGATCAAGAGGGATCCGTTAGCTATGCGGCTCCGTGAAGATCAAATAAAGCAAATTTGGGGTGG AGATCCAGTTTACCCGACGATCAACTACAAGCAAGACCCAAACGAGATTATTGATTTCAGGGGTCCAGATTTTCATGAGCCAACACCAAATATGGATGCG TACCTGAAAGAGATAGGAGTACTCGTAACTGAAGATGAATTTGAAGAAAGTATAGGAAAAGTGAAGACCGAAGAAATCGATCAAACAACTGACATGGATG AAGCCATGGCTCGAGCAGTTGACATTGGAGAACTTGATGACGGAGAGGATAGCGACGGTAAAGAGAAGGGAAAGGTTGATGAAGACAATGTGCAGCGCAA TTGGAGCGTCCTGAAGACTACTCCCGAACTGCGGAAATCAAAGCCTAAACCCAAGAAGGACGGTGCGATGACTCTGGATGAGGCCGTAGATGACTCCGAG AACTTGACCGACTTTCTCATGGACTTCGACCAAGATTGA
AA sequence Show only first row Show all	>Lus10038523 pacid=23158226 polypeptide=Lus10038523 locus=Lus10038523.g ID=Lus10038523.BGIv1.0 annot-version=v1.0 MASLQANWIYQGHTSISDRGLKIPVSSYRFRTQFQFGVSRKPRSLPRLKCESEDEEKGIEHVNVERAPYHSYLDSTSGQIEPASGARASIPGEELWPEGT LDRVRAARAPEPTGISTGTPSYGQNPGSRRRKHWGSAAGSGSGEVIEMEADLETETIEVEEEARDESSDYVIYEADEDEEELTGFELDKKLGRPHPFIDP KVQKPIEGILPEEELWWNWKRDDSEQWSRWQRRKPDSETVFLKAMADNGDVKLYGEHPTLTETALYRSRKHLYKEERLQAERERLERIGPLAFYSGWVKK WNRDTSREAVQKHYEETGEDETFQLMEMFSYQTDREYRIMMGTDVRIKRDPLAMRLREDQIKQIWGGDPVYPTINYKQDPNEIIDFRGPDFHEPTPNMDA YLKEIGVLVTEDEFEESIGKVKTEEIDQTTDMDEAMARAVDIGELDDGEDSDGKEKGKVDEDNVQRNWSVLKTTPELRKSKPKPKKDGAMTLDEAVDDSE NLTDFLMDFDQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	0	1
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	1.4	0.9372
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10030535 [exp]	4.0	0.9124
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	4.7	0.9192
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	6.0	0.9177
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	6.5	0.9146
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Lus10005945 [exp]	7.4	0.9066
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	8.4	0.9175
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	9.2	0.8833
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10020797 [exp]	9.5	0.9097
AT1G17850			Rhodanese/Cell cycle control p...		Lus10041981 [exp]	10.4	0.8780

Compare expression of checked genes

Lus10038523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.