Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 497 / 5e-174 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 332 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 330 / 8e-109 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 308 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 230 / 3e-71 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 230 / 5e-71 alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 230 / 4e-70 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 224 / 2e-69 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 214 / 3e-65 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 202 / 4e-60 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015521 [exp] 737 / 0 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 737 / 0 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 723 / 0 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 451 / 2e-157 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 246 / 3e-76 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 246 / 5e-76 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 243 / 6e-75 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 233 / 5e-72 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 230 / 3e-71 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057900 [exp] 560 / 0 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 552 / 0 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 346 / 4e-115 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 343 / 6e-114 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 321 / 2e-105 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 243 / 3e-75 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 241 / 2e-74 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 222 / 4e-68 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 221 / 5e-68 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 219 / 5e-67 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10038524 pacid=23158267 polypeptide=Lus10038524 locus=Lus10038524.g ID=Lus10038524.BGIv1.0 annot-version=v1.0 ATGACTCCGACGATATCCCCTAAGAGGGATATTTCGTCTCGTTGGCGAGAGTTTCATGGTGAAGGTGATTGGACTGAGGGAGATCTCCTCAGCCCGCTCC ACCCCTGCCTCCGCCGTGAGATTGTAAAGTACGGCGAGCTAGCCGCCGCCACGTATGACGGGTTTGACTTTGACCCGCTTTCGGAATTCTGCGGGAGCTG TCGGTTCAACCAGAACAGGCTCCTCCAGGAGTTGGGCCTGGCGAACAAGCATGGATACGAAGTCACCAAATACATATACGCCATGTCCCACGTGGACGTC CCTGATTGGTTGTCGAGGACGTATATCACGTGGAGTAAAGACTCCAACTGGATGGGGTACGTGGCGGTTAGTGATGACCAAGAATCCAAACGGATCGGAC GCAGAGACATTGTTGTTGCGTGGCGCGGGACCGTAGCTCCCACAGAATGGTTCAGTGACTTGAGAGCTAAGCTGGTCCGAGTTAACGATGTCAAAGAAAT CAAAGTTCAAGAAGGGTTTCTCTCCGTTTACAAATCCAAAAGCGAGTTCACCAGGTACAACAAATGGAGCGCTTCAGAACAAGTCATGGACGAGTTGATC CGACTAGTCAAACTCTACAAAAATGAAAATAAAGAAGAGGTGAGTATTACCATAACCGGGCACAGCCTCGGAGGAGCGTTAGCCCTGCTAACGGCCTACG AGGCGGCGACTCTCATACCCAGAGTCTTCATCAGCGTGGTATCCTTCGGAGCCCCCCGAGTTGGGAACTTGGCATTCAGGGAGAAGCTAACGAAGGAGCT CGGAGTCAAAGTCCTAAGAGTGGTCGTTGACCAGGACATTGTCCCCGATCTTCCAGGCATCATCACCACCATTCTGAAGAAGCTGTCGTTAAGGAAGAGG ATCAACTGGATTTACAGGCACGCCGGGAAGGAGCTGAAGCTCGATATTAGATCGTCGCCATACCTAAAACAAGATTCTGATATAACTGGGAGCCATAACA TGGAGGTGTATCTGCATTTGGTTGATGGGTTTGTGAGCAAGAAGTCCAAATTTCGATGGAATGCGAGGAGGGATTTGGCGCTGGTAAATAAGAGTACAGA TAGGTTGATCGATGAGCTCAAGATTCCACACTTCTGGTACGATATGCCTTACAAGGGACTTGTGTTGAATAAGCATGGAAGGTGGGTTAAACCCGGAAGG ATGCTTGAAGATGTTCCTAGTCCTTTGTTTCGTGATGATTCCAACAACGAGCCTGTGCTTCAAATTTTGGACGATTAA
AA sequence Show only first row Show all	>Lus10038524 pacid=23158267 polypeptide=Lus10038524 locus=Lus10038524.g ID=Lus10038524.BGIv1.0 annot-version=v1.0 MTPTISPKRDISSRWREFHGEGDWTEGDLLSPLHPCLRREIVKYGELAAATYDGFDFDPLSEFCGSCRFNQNRLLQELGLANKHGYEVTKYIYAMSHVDV PDWLSRTYITWSKDSNWMGYVAVSDDQESKRIGRRDIVVAWRGTVAPTEWFSDLRAKLVRVNDVKEIKVQEGFLSVYKSKSEFTRYNKWSASEQVMDELI RLVKLYKNENKEEVSITITGHSLGGALALLTAYEAATLIPRVFISVVSFGAPRVGNLAFREKLTKELGVKVLRVVVDQDIVPDLPGIITTILKKLSLRKR INWIYRHAGKELKLDIRSSPYLKQDSDITGSHNMEVYLHLVDGFVSKKSKFRWNARRDLALVNKSTDRLIDELKIPHFWYDMPYKGLVLNKHGRWVKPGR MLEDVPSPLFRDDSNNEPVLQILDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	1.4	0.9747
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	2.0	0.9693
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	2.4	0.9549
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	4.0	0.9429
AT1G01480		AT-ACC2, ACS2	1-amino-cyclopropane-1-carboxy...		Lus10032301 [exp]	6.3	0.9444
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	11.6	0.9033
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	19.3	0.9340
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	20.9	0.9073
AT1G21326			VQ motif-containing protein (....		Lus10029768 [exp]	24.4	0.9126
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	25.8	0.9459

Compare expression of checked genes

Lus10038524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.