Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30370 511 / 2e-177 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 327 / 5e-106 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 325 / 8e-105 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 303 / 2e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 224 / 1e-67 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 221 / 2e-66 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 219 / 3e-66 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT4G16820 223 / 4e-66 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 211 / 1e-62 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 205 / 8e-60 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023280 [exp] 949 / 0 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 789 / 0 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 736 / 0 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023281 [exp] 476 / 2e-165 AT1G30370 342 / 2e-113 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10040158 [exp] 246 / 8e-75 AT4G16820 573 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 246 / 3e-74 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10004364 [exp] 245 / 3e-74 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 229 / 3e-69 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 224 / 1e-67 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G057900 [exp] 590 / 0 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 583 / 0 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 340 / 4e-111 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 339 / 2e-110 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 315 / 3e-101 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 241 / 5e-73 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G153100 [exp] 241 / 1e-72 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 224 / 9e-68 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 217 / 7e-65 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 213 / 2e-63 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10038526 pacid=23158127 polypeptide=Lus10038526 locus=Lus10038526.g ID=Lus10038526.BGIv1.0 annot-version=v1.0 ATGGAATGTTCCTCTCCCTCACCGTCGCCGTTAAGCCCACAAGCCGCCGTCGCCGCCCCGAAGTCTCCCTTCCACCAAACGTGGAGAAGAAGCATTAAGG TCTGGAAGTTGAAGATCAAAGCCAAGTGGCTCGCTTTCAAATCCGCATTCTCCCGCCTATCCCGCCGATCCAAACCACGCCGTCGACAGCATTCGCTGGC GGCGCCGCCGACAAGACAGAACAGTACTACTGCCGCCCCGTCCCCGTTGACCGTGGTCAACGAGAACAAACCCCTGCCTGACGGTCTCCGCCCGCACAAG CCGCTGGCGAAACTCATCGAGGCTCCGTACTGCGCAGCCGATTTCATTGACTGGGGAGACCGGATGACTCCCACTGTATCCCCCAAGAAGGACATCTCCG CCCAGTGGCGAGAGTTTCATGGGGAAGGTGATTGGATCGAGGGTCAGGAGAGCAGTCTTCTGAGCCCGCTCCACCCTTGCCTCCGCCGTGAGATCATCAA GTATGGCGAGCTTGCCGTTGCCACCTACGACGGGTTCGACTTTGACCCGTTGTCTGAGTTCTGCGGGAGCTGTAAGTTCAACTGCAACAAGCTCCTCCAG GAGTTGGGCCTCGAGAACAAGCATGGATACAAGGCGACCCGATATATCTACGCCATGTCCCACGTGGATGTCCCTGATTGGTTCTCGGAGACTTACACCA CGTGGAGCAAGGACTCCAACTGGATGGGGTATGTGGCGGTCAGCAACGACCAGGAGTCCAAACGGATCGGACGTAGAGACATCGTTGTCGCCTGGCGTGG GACTGTAGCCCCGACCGAATGGTTTAGCGACATCAAAGCCAAGTTGGTCCGAGTCAATGATGTTAAAGAAGTCAAAGTACAAGAAGGGTTCCTCTCCCTT TACAAGTCCAAAGGCGAGTTCACGAGGTACAACAAATGGAGCGCTTCGGAACAAGTCATGGACGAGCTGGTCCGACTAGTCAAACTCTACAAAAATGAAA ATAAAGAAGAGATCAGCATAACCATAACCGGCCATAGCCTCGGAGGAGCGTTAGCCCTGCTAACGGCCTACGAGGCGGCGACTTTGATACCCGGAGTCTT CATCAGCGTGATATCCTTTGGAGCTCCGAGAGTTGGGAACTTGGCGTTCAGGGAGAAGCTGACAAAAGACCTGGGAGTCAAAGTCCTCAGAGTGGTTGTT GACCAGGACATTGTTCCCGACCTTCCGGGGCTCATAGTCAACGCAATTGTAAAGAAAGTCTGGCTAGGTAAGAGGATCAACTGGATTTATAGGCATGTCG GGACAGAGCTGCAGCTTGACATCAATCTGTCACCTTATCTAAAAAAGGATTCTGATATCGCTGGGAGCCATAACATGGAGATATATCTGCATCTCGTTGA TGGGTTCATAAGCAGCAAGTCCAAGTTTCGGTCGGATGCGAGAAGGGATTTGGCGCTGGTGAATAAGGGTACCGATAGGTTGATCGATGAGCTCAAGATT CCCGAGTTCTGGTACGATATGCCGTACAAGGGACTTGTGTTGAACAAACATGGGAGGTGGGTTAAACCGGGAAGGATGCTCGAAGATGTTCCTACTCCTT TGTTTAGTGACGATTCCCGTCCTGAACCTGTGCTTCAGGTTTTGGACGACTAG
AA sequence Show only first row Show all	>Lus10038526 pacid=23158127 polypeptide=Lus10038526 locus=Lus10038526.g ID=Lus10038526.BGIv1.0 annot-version=v1.0 MECSSPSPSPLSPQAAVAAPKSPFHQTWRRSIKVWKLKIKAKWLAFKSAFSRLSRRSKPRRRQHSLAAPPTRQNSTTAAPSPLTVVNENKPLPDGLRPHK PLAKLIEAPYCAADFIDWGDRMTPTVSPKKDISAQWREFHGEGDWIEGQESSLLSPLHPCLRREIIKYGELAVATYDGFDFDPLSEFCGSCKFNCNKLLQ ELGLENKHGYKATRYIYAMSHVDVPDWFSETYTTWSKDSNWMGYVAVSNDQESKRIGRRDIVVAWRGTVAPTEWFSDIKAKLVRVNDVKEVKVQEGFLSL YKSKGEFTRYNKWSASEQVMDELVRLVKLYKNENKEEISITITGHSLGGALALLTAYEAATLIPGVFISVISFGAPRVGNLAFREKLTKDLGVKVLRVVV DQDIVPDLPGLIVNAIVKKVWLGKRINWIYRHVGTELQLDINLSPYLKKDSDIAGSHNMEIYLHLVDGFISSKSKFRSDARRDLALVNKGTDRLIDELKI PEFWYDMPYKGLVLNKHGRWVKPGRMLEDVPTPLFSDDSRPEPVLQVLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10005262 [exp]	1.0	0.9918
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	2.0	0.9803
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	4.9	0.9774
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10036310 [exp]	5.1	0.9664
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	5.2	0.9576
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	6.2	0.9629
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	7.7	0.9792
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	8.1	0.9753
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	8.2	0.9378
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	10.2	0.9646

Compare expression of checked genes

Lus10038526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.