Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05460 248 / 9e-81 RNI-like superfamily protein (.1) AT4G05475 209 / 2e-65 RNI-like superfamily protein (.1) AT4G05470 201 / 3e-62 RNI-like superfamily protein (.1) AT4G05490 192 / 1e-58 RNI-like superfamily protein (.1) AT4G05497 181 / 4e-55 RNI-like superfamily protein (.1) AT4G03630 176 / 2e-53 RNI-like superfamily protein (.1) AT5G52480 167 / 5e-50 RNI-like superfamily protein (.1.2) AT5G57900 113 / 9e-29 SKIP1 SKP1 interacting partner 1 (.1) AT4G08980 112 / 3e-28 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G30640 98 / 3e-23 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023277 [exp] 671 / 0 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10026115 [exp] 290 / 5e-97 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10008704 [exp] 259 / 4e-86 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1) Lus10036483 [exp] 102 / 1e-24 AT4G08980 347 / 6e-120 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10010351 [exp] 99 / 2e-23 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10019104 [exp] 85 / 2e-18 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10034452 [exp] 83 / 1e-17 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10013444 [exp] 69 / 9e-13 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 69 / 1e-12 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104900 [exp] 103 / 4e-25 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.002G099100 [exp] 100 / 1e-23 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.005G088800 [exp] 62 / 2e-10 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.016G019500 [exp] 61 / 3e-10 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.012G137700 [exp] 49 / 3e-06 AT3G48880 389 / 1e-136 RNI-like superfamily protein (.1.2) Potri.015G139700 [exp] 47 / 8e-06 AT3G48880 386 / 2e-135 RNI-like superfamily protein (.1.2) Potri.002G137100 [exp] 47 / 1e-05 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.012G106700 [exp] 47 / 1e-05 AT3G48880 55 / 3e-08 RNI-like superfamily protein (.1.2) Potri.013G013100 [exp] 46 / 3e-05 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 46 / 4e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10038528 pacid=23158248 polypeptide=Lus10038528 locus=Lus10038528.g ID=Lus10038528.BGIv1.0 annot-version=v1.0 ATGGCTTCGACAGCTACTCCTTCTTCTTCCTCTACGACTCCTAGGAAGCCAATCAACACCAACCCTCATGCTCGGCTGCGCGGAAGCACCACCACCGTCA CCACTTCTCCATTGAAAAGGCTCAATTTGATGGATCCACCGACAGCGCACTCCGACGTCGAAGCCGGATCTATGTTAGGAGGAGGTCCGGACTGGGCAGA AATGTCGCCGGAGCTACTCACCGTGATAATGAGCCATCTGAAGATAGTGGATCGGCTGAAAACTGCTCAGAAAGTGTGCTCCTCCTGGCGGAAAGTTTGC CGGGACCCTTACCTGTGGAGATCTATCGATATTAGGAAATGTTCGTGGGATCGAGTTTGTGATGTGGAGCTAGTCTGCAAGGAGGCTGTTGATCGGAGCT CCGGGGGTTTGGTTTCTCTCAAAATTGTGGGCTTTGGCACTGATCAACTGCTGGCTTACATCGCTAATGAATCAAGCCAGCTTAAGCGTCTTCAGCTCGT ATACTGCAACAATATCTCAGATCAAGGATTCAATACAGCAGTTCAGAAACTCCTCTTCCTCGAAGAGCTCGAAATTTCATATTGCTCCCTCTCTAAGGAC GCATTATTGACCGCTGGTCGCTACTGTCCTTTCCTGAACTCGCTGAAACTAAACCAGACAGGCTGCAGGTGGCCTCGAGTAGAAAACGACGAGGCGACAG CAATTGCGGAGAACATGCCCGGTTTGCACCACCTGCAGATATTCGGGAACAAGCTGACGAATCACGGCTTGCAAGCTATTCTCGACGGCTGCAAACACTT GGAGTCGCTCGATCTTCGACAGTGTTTCAATGTACGTGTCGAAGGGGATCTGGAGAAGAGATGCCGGATTCAGATTGAGGATCTTCGGTGTCCTGATGAT TTGACAGATGACTACCCTTATGATGCTGAGATTCCGGACTATGACTCGTCTGAAGAGGATTATCCGTCGGGATTCTCCGACCATGAGTTGTCCACTGGCG ACGACTACTACGAGTTCTCGGCTGACAGCGAGCTCTCTGATGCAGAGTTTTACTGA
AA sequence Show only first row Show all	>Lus10038528 pacid=23158248 polypeptide=Lus10038528 locus=Lus10038528.g ID=Lus10038528.BGIv1.0 annot-version=v1.0 MASTATPSSSSTTPRKPINTNPHARLRGSTTTVTTSPLKRLNLMDPPTAHSDVEAGSMLGGGPDWAEMSPELLTVIMSHLKIVDRLKTAQKVCSSWRKVC RDPYLWRSIDIRKCSWDRVCDVELVCKEAVDRSSGGLVSLKIVGFGTDQLLAYIANESSQLKRLQLVYCNNISDQGFNTAVQKLLFLEELEISYCSLSKD ALLTAGRYCPFLNSLKLNQTGCRWPRVENDEATAIAENMPGLHHLQIFGNKLTNHGLQAILDGCKHLESLDLRQCFNVRVEGDLEKRCRIQIEDLRCPDD LTDDYPYDAEIPDYDSSEEDYPSGFSDHELSTGDDYYEFSADSELSDAEFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	0	1
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	8.2	0.8119
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	8.8	0.7942
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	10.8	0.8087
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	12.2	0.8041
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	15.0	0.8056
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	16.3	0.7929
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	23.7	0.7974
					Lus10006349 [exp]	24.9	0.7704
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10027485 [exp]	28.4	0.7394
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	34.5	0.7831

Compare expression of checked genes

Lus10038528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.