Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05430 144 / 4e-44 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G56590 115 / 5e-30 O-Glycosyl hydrolases family 17 protein (.1) AT1G09460 108 / 4e-28 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G29360 108 / 2e-27 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 106 / 1e-26 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 105 / 2e-26 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G29380 103 / 2e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 100 / 5e-26 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G66870 97 / 5e-26 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G35740 95 / 7e-25 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023276 [exp] 340 / 2e-120 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10012937 [exp] 123 / 5e-33 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034987 [exp] 117 / 8e-31 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004546 [exp] 103 / 4e-26 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 101 / 6e-26 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10004600 [exp] 102 / 7e-26 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10015151 [exp] 103 / 2e-25 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 101 / 9e-25 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 100 / 2e-24 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012000 [exp] 187 / 1e-60 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 185 / 2e-59 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 183 / 7e-59 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.018G068600 [exp] 130 / 4e-35 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.013G003500 [exp] 111 / 3e-28 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 110 / 5e-28 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.017G055700 [exp] 102 / 8e-27 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 104 / 1e-26 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G353400 [exp] 103 / 2e-26 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 101 / 4e-26 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10038529 pacid=23158386 polypeptide=Lus10038529 locus=Lus10038529.g ID=Lus10038529.BGIv1.0 annot-version=v1.0 ATGGCTGATTCCTTGAAGGACAGAGCAGCCTTAAAAAGAACACACAAACCAGACGACAGAACTCCTCCGGTAGAGCAAAACCACAGTAAACGAATCAAAA TGACGACAATCAGGAAGAAGAACAAGATGATCAATATGCTTGCTTACTTGCAATGCACCTTCTTTCTCGCACAATCATTCCACTTGGGCGACGCGCGGGC GGTTGAGGCGGCGGCGGAGAGGGTGGAGGGGGCGATGCCGGTGACGACATACTCGCCGCCGGAAGGGAATACGACGTTCCTGGACGGGACGACGTGGTGC GTGGCGGCGGCAGGGGCGCCGCAGATAGATCTGCAGAAGGCATTGGACTGGGCGTGTGGGTTGGGAATGGCGGAGTGTAAGGAGATTCAGGAGGAAGGAG CGTGCTTTCACCCTAACAACTTGGTATCCCACGCTTCCTACGCTTTTAATAGCTATTACCAGCAGAATGGCAACTCCGACATCGCCTGCAACTTCGGCGG CGCTGCTTCACTTACCAAACATGATCCCAGTTATGGGAAGTGCATATATGCATCAGCTGGATCTGTTGGATGGGGAGCTGAGTTGAGACCAGAGGTTGGA ATATGGTGGAAGTGTGCTGTGATTGTGATGCTATTGTACTGGCAAACTAGCTGA
AA sequence Show only first row Show all	>Lus10038529 pacid=23158386 polypeptide=Lus10038529 locus=Lus10038529.g ID=Lus10038529.BGIv1.0 annot-version=v1.0 MADSLKDRAALKRTHKPDDRTPPVEQNHSKRIKMTTIRKKNKMINMLAYLQCTFFLAQSFHLGDARAVEAAAERVEGAMPVTTYSPPEGNTTFLDGTTWC VAAAGAPQIDLQKALDWACGLGMAECKEIQEEGACFHPNNLVSHASYAFNSYYQQNGNSDIACNFGGAASLTKHDPSYGKCIYASAGSVGWGAELRPEVG IWWKCAVIVMLLYWQTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05430			Carbohydrate-binding X8 domain...		Lus10038529 [exp]	0	1
AT4G05430			Carbohydrate-binding X8 domain...		Lus10023276 [exp]	1.0	0.9593
					Lus10038232 [exp]	5.1	0.9473
AT2G36650			unknown protein		Lus10014389 [exp]	5.5	0.9442
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	7.7	0.9390
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	8.4	0.9222
AT2G36650			unknown protein		Lus10023883 [exp]	8.5	0.9339
					Lus10025868 [exp]	11.4	0.9366
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	15.3	0.9223
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	15.5	0.9255
					Lus10014171 [exp]	16.1	0.9023

Compare expression of checked genes

Lus10038529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.