Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34660 2501 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT1G30400 2487 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2) AT1G30410 2084 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) AT1G30420 2059 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1) AT3G62700 758 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT1G04120 753 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT2G47800 746 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G60160 746 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G59140 711 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G13080 698 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023275 [exp] 3187 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10036153 [exp] 1969 / 0 AT2G34660 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10022858 [exp] 750 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 749 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 747 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10039320 [exp] 742 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10011498 [exp] 739 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10027567 [exp] 734 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10023139 [exp] 714 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091200 [exp] 2680 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Potri.004G034800 [exp] 2336 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 2315 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.011G043100 [exp] 2089 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.014G180100 [exp] 781 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.014G130500 [exp] 772 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.002G205500 [exp] 752 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.001G362200 [exp] 736 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 730 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.008G179500 [exp] 719 / 0 AT3G13080 1261 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10038530 pacid=23158269 polypeptide=Lus10038530 locus=Lus10038530.g ID=Lus10038530.BGIv1.0 annot-version=v1.0 ATGGCTTTTGTCCCATTGGATTGGTACTGCCGACCGTTGCCCAATGGGCTGTGGGCAAAGGTTGTGCGGAATGCCTTTGGTCCATACACACCATGCCTGA CGGATACAGTGGTGATGGTTTTTTCTGACTTGGTTCTAATGGGACTCTGTATCTACCGGATATGGCTCACCATGAAAGATCACAAGGCTCGCCGCTTCTG TTTGAAGTCGAATTGGTACAACTATCTGCTGGGTTTACTGGCTGCTTATGTTGCAGCGGAGCCATTGTTTCGACTTGTGATGGGAATTTCAGCTGTGGAT ATTGATGGACAAATAGGTCTTGCTCCGTTTGAGGTGGTTTCTTTGATTGTTGAGGCTCTTGCTTGGTGCTCCATGTTGGTAATGATTGGTTTAGAGACCA AGGTATACATCACGGAGTTTCGATGGGTTGTCAAGTTTGGGGTCGTTTATACCTTGGTGGGGGATATAGTGATGCTCAATCTTGTTCTTTCAGTAAAGGA CTATTATAATAGCTTTGCACTCTATTGGTACATCAGCGAAGTTGCTGTTCAGGTACTGTTTGGAATACTTCTGCTCGTGTATTTCCCGGATATGGTTCCT TATCCTGGTTACACCCCTGCGCGAACTGATATTTCGGATGATAACGAGTACGAAGAACTCCCTGGTGGAGAATACATATGTCCTGAGCGCCACGTGAATA TATTTTCCAATATCATCTTTTCCTGGATGAGTCCTCTAATGCAGCTCGGCTATAAACGACCCATCACTGAGAAGGATGTCTGGAAATTGGATACCTGGGA TCAAACTGAGACTCTAAATGATAGGTTTCAGAAATGCTGGGCTGAGGAATCACGGAAACCAAAGCCTTGGATTTTGAGGGCATTAAATAGGAGTCTTGGA GGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGAAATGATGCTTCCCAATTTGTTGGGCCACTTTTGCTTAACCAGCTTCTACAGTCAATGCAAGCAG GCGACCCGGCTTGGATTGGTTACATATACGCTTTCTCAATCTTTGTAGGCGTGGTATTGGGCGTTTTAAGTGAAGCTCAGTATTTTCAGAATGTGATGCG TGTTGGGTTCCGCCTGAGAGCAACATTGGTTGCTGCTGTGTTTCGGAAATCTCTAAGGCTGACTCATGAAAGTCGGCGCAGGTTTCCATCTGGAAAAATT ACCAACTTGATGACAACTGATTCCGAGTCGCTGCAGCAAGTGTGCCAATCACTTCATACTCTGTGGTCAGCCCCTTTCCGCATTATCATTGCAATGGTGC TTCTCTATCAGCAGCTTGGTGTTGCATCACTTATAGGGGCACTAATGCTTGCACTTCTGATTCCTATTCAGACAATTGTTATAAGCAGAATGCAGAAGTG GTCTAAGGAGGGTCTGCAGCGTACAGACAAGCGAATCGGGCTTATGAATGAAATTTTGGCTGCAATGGACACTGTGAAATGTTATGCATGGGAGAATAGT TTCCAGGCTAAGGTCCAAAGCGTTCGAGATGATGAGTTGTCATGGTTTCGTAAAGCATCATTACTAGGAGCGTTGAATGGTTTCATAATAAACAGCATCC CTGTTCTGGTGACGGTGGTTTCATTTGGTGTCTTCACTTTGCTTGGAGGAAATCTGACACCTGCTGTAGCGTTCACTTCACTTTCCCTGTTTGCCGTGCT TCGCTTTCCCCTGTTCATGCTTCCTAATATGATCACTCAGGTAGTGAACGCTAATGTATCTTTGAAGCGGTTGGAGGATCTATTATTAGCTGAAGACAGA GTACTTATGCCAAACCCCCCTCTTGATTCTGAACTGCCAGCCATCTCAATAAAAAATGGGAACTTCGCATGGGATTCCAAGGCAGAGACGCCCACATTAT CAAACATCAACTTGGATGTACCGATTGGTAGCTTGGTTGCAATTGTTGGAGGTACCGGAGAAGGGAAAACCTCGCTCATTTCAGCAATGCTTGGGGAGCT TCCTGCCTTTGGGGATTCAAGTGTTGTTTTAAGAGGAACAGTAGCTTATGTTCCTCAAATATCTTGGATCTTTAATGCAACTGTTCGTGATAATATATTG TTTGGATCTCCTTTTGATTCTACAAGATATGGGAAGTCAATAGACGTAACAGCATTGCAGCATGATCTTGAATTGCTTCCGGGTGGTGATCTCACTGAGA TTGGCGAAAGAGGAGTGAATATTAGTGGTGGGCAGAAGCAGCGAGTTTCCATGGCTAGGGCTGTGTATGCTGATTCAGATGTCTATATCTTTGATGATCC ATTGAGTGCTCTAGATGCTCATGTAGCTCGACAGGTTTTCGATAAATGTCTCCGAGGGGAATTGAGCAAGAAGACTAGAGTTCTGGTCACAAACCAGCTA CATTTCCTTTCGCAAGTCGATAAAATCATCTTAGTCCATGAGGGCACCGTCAAAGAGGAGGGAACCTTTGAGGAACTGTCTAGTAACGGTGTTCTGTTCC AGAAGCTTATGGAAAATGCTGGGAAAATGGAAGAATATGCAGATGAGAGGGAAGATGATGAAGCCACGGAAAAGAAAACATCTTCAAAACCTGTGAGTAA CGGCAATGGTCAAATAAACGGCGAAACTGAAGCAAAGAAGCCTAAAGAAGGCAAATCTATTCTCATTAAGCAAGAAGAGCGGGAAACAGGTGTCATCAGT TGGAAAGTTGTGTCACGATACAAGAATGCATTAGGAGGTACTTGGGTGGTATGCGTACTCCTTTCCTGCTATGTAATGTCAGAGGTTCTGCGTGTTTCAA GTAGTACTTGGTTGAGCAATTGGACTGACCAGGGTGCTTCATCAAGGCATGGACCTGGCTTTTACAATCTCATCTATGGACTCCTCTCCTTTGGTCAGGT TATGACAACATTAGTAAATTCGTACTGGTTGATTCTGAGTAGTCTGTATGCTGCGAAAAGGCTACATGATGCGATGCTTGGGTCAATGTTAAGAGCTCCA ATGGTCTTCTTCCACACTAATCCACTTGGACGTATTATCAATAGATTTGCAAAGGATATGGGAGATATTGATCGCACTGTTGCACCATTTGTTAACATGT TTCTCGGGCAAGTGGCACAACTCCTCTCTACGTTTGTCCTCATAGGAATTGTGAGCACTATGTCCTTGTGGGCCATTATGCCACTTTTGGTATTGTTTTA CTGGGCATATCTATATTATCAGAGTACTGCTCGCGAAGTGAAGCGGTTGGATTCTATATCGCGATCCCCTGTCTATGCACAATTTGGTGAAGCTTTGAAT GGTCTATCAGCTATTCGTGCTTACAAAGCTTATGACCGCATGGCTGATATCAACGGGAGATCTATGGACAACAATTTGAGATATACCCTTGTCAACATGG GTGCGAACCGCTGGCTTGCAATTCGTCTGGAAACAATAGGAGGTCTTATGATTTGGTTCACAGCGACATTTGCTGTAATGCAAAATGGAAGGGCGGAGAA CCAGCAGGATTATGCATCTACGATGGGTCTGCTTTTGAGTTATGCGTTGAATATTACAAGTTTGTTGACTGGTGTGCTAAGGCTTGCAAGTTTGGCTGAG AACAGTTTAAATGCTGTGGAGAGAGTTGGCACTTACATAGAGTTGCCATCAGAAGCTCCGGGCATTATTGAAAATAACCGCCCTCCTCCTGGATGGCCAT CATCAGGATCCATCAAGTTTGAAGATGTTGTCTTACGTTACAGGCCTGAACTTCCTCCTGTCCTTCATGGCTTATCCTTCAGAATTTCTCCAAGTGATAA GGTTGGGATCGTCGGAAGGACTGGTGCTGGCAAATCCAGTATGCTGAATGCTTTATTTCGTATTGTGGAGTTGGAAAGGGGAAGAATCTTGATTGATAAC TGTGATATCGCGAAGTTTGGATTGCTGGATCTTCGTAAAGTGCTTGGAATTATACCACAATCCCCTGTTCTGTTTTCAGGTTCTGTAAGGTTTAACCTTG ATCCATTCAATGAACACAATGATGCCGATCTTTGGGAGGCTCTAGAGAGGGCACACTTGAAGGATGCCATTCGAAGGAACTCCTTGGGTCTGGATGCTGA GGTTTCCGAGGCGGGAGAGAACTTCAGTGTTGGGCAGAGACAACTACTGAGTCTTGCGCGAGCATTATTGCGCAGATCCAAGATCCTGGTTCTCGACGAG GCTACTGCAGCAGTCGATGTCAGGACAGATGCCCTTATTCAGAAAACCATTAGGGAAGAATTCAGAGCCTGCACAATGCTCATAATTGCTCACCGGCTGA ATACAATTATCGACTCTGACCGCGTCCTTCTGCTCGACTCTGGCCGGGTTCTGGAATATGACAGTCCGGACGAGTTGTTGTTGCGTGAAGACAGTGCTTT CTCGAAGATGGTTCAAAGCACGGGATCTGCCAATGCTCAGTACTTGCGCAGCTTAGTACTAGGAGGGGAAGGAGAGGGCAGGCCAAGCAAAGCGGGTAAA CAGTTAGATGAACAGAGGAAATGGCTGGCCTCTTCTAGGTGGGCTGCTGCCACAAATTATGCTCTCGGCATCAGCCTCACTTCGTCACATAACGACCTTC ATCGCTTAGAGATCGAGGATGAGAACTCCATCCTGAAGAAAACAAAAGATGCGGTGGTGACGTTGCAGGCGGTTCTGGAAGGGAAACATGACGCGGCAAT TGAAGAGACTTTGGAACAGCACCAGATTCCCAGAGAGGGATGGTGGTCATCGCTATACAAAATGGTGGAAGGTCTTGCAATGATGGGCAGATTGAGTAGG AACAGATTGAACCAATCAGGGTACGGGTTTGAAGAGAATGCAATCAATTGGGATCATGTCGAAATGTAG
AA sequence Show only first row Show all	>Lus10038530 pacid=23158269 polypeptide=Lus10038530 locus=Lus10038530.g ID=Lus10038530.BGIv1.0 annot-version=v1.0 MAFVPLDWYCRPLPNGLWAKVVRNAFGPYTPCLTDTVVMVFSDLVLMGLCIYRIWLTMKDHKARRFCLKSNWYNYLLGLLAAYVAAEPLFRLVMGISAVD IDGQIGLAPFEVVSLIVEALAWCSMLVMIGLETKVYITEFRWVVKFGVVYTLVGDIVMLNLVLSVKDYYNSFALYWYISEVAVQVLFGILLLVYFPDMVP YPGYTPARTDISDDNEYEELPGGEYICPERHVNIFSNIIFSWMSPLMQLGYKRPITEKDVWKLDTWDQTETLNDRFQKCWAEESRKPKPWILRALNRSLG GRFWWGGFWKIGNDASQFVGPLLLNQLLQSMQAGDPAWIGYIYAFSIFVGVVLGVLSEAQYFQNVMRVGFRLRATLVAAVFRKSLRLTHESRRRFPSGKI TNLMTTDSESLQQVCQSLHTLWSAPFRIIIAMVLLYQQLGVASLIGALMLALLIPIQTIVISRMQKWSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENS FQAKVQSVRDDELSWFRKASLLGALNGFIINSIPVLVTVVSFGVFTLLGGNLTPAVAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRLEDLLLAEDR VLMPNPPLDSELPAISIKNGNFAWDSKAETPTLSNINLDVPIGSLVAIVGGTGEGKTSLISAMLGELPAFGDSSVVLRGTVAYVPQISWIFNATVRDNIL FGSPFDSTRYGKSIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYADSDVYIFDDPLSALDAHVARQVFDKCLRGELSKKTRVLVTNQL HFLSQVDKIILVHEGTVKEEGTFEELSSNGVLFQKLMENAGKMEEYADEREDDEATEKKTSSKPVSNGNGQINGETEAKKPKEGKSILIKQEERETGVIS WKVVSRYKNALGGTWVVCVLLSCYVMSEVLRVSSSTWLSNWTDQGASSRHGPGFYNLIYGLLSFGQVMTTLVNSYWLILSSLYAAKRLHDAMLGSMLRAP MVFFHTNPLGRIINRFAKDMGDIDRTVAPFVNMFLGQVAQLLSTFVLIGIVSTMSLWAIMPLLVLFYWAYLYYQSTAREVKRLDSISRSPVYAQFGEALN GLSAIRAYKAYDRMADINGRSMDNNLRYTLVNMGANRWLAIRLETIGGLMIWFTATFAVMQNGRAENQQDYASTMGLLLSYALNITSLLTGVLRLASLAE NSLNAVERVGTYIELPSEAPGIIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFRISPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDN CDIAKFGLLDLRKVLGIIPQSPVLFSGSVRFNLDPFNEHNDADLWEALERAHLKDAIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDE ATAAVDVRTDALIQKTIREEFRACTMLIIAHRLNTIIDSDRVLLLDSGRVLEYDSPDELLLREDSAFSKMVQSTGSANAQYLRSLVLGGEGEGRPSKAGK QLDEQRKWLASSRWAAATNYALGISLTSSHNDLHRLEIEDENSILKKTKDAVVTLQAVLEGKHDAAIEETLEQHQIPREGWWSSLYKMVEGLAMMGRLSR NRLNQSGYGFEENAINWDHVEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10038530 [exp]	0	1
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	3.3	0.9599
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	4.0	0.9536
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	5.9	0.9432
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10008170 [exp]	8.8	0.9455
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	11.0	0.9182
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	13.3	0.9494
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	16.3	0.9469
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	21.4	0.9474
AT1G18900			Pentatricopeptide repeat (PPR)...		Lus10033110 [exp]	22.2	0.9379
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10025801 [exp]	23.1	0.8832

Compare expression of checked genes

Lus10038530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.