Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30440 876 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G03250 584 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G44820 521 / 3e-178 Phototropic-responsive NPH3 family protein (.1) AT5G13600 518 / 5e-178 Phototropic-responsive NPH3 family protein (.1) AT5G66560 473 / 4e-159 Phototropic-responsive NPH3 family protein (.1) AT5G64330 418 / 4e-137 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G50840 412 / 1e-136 Phototropic-responsive NPH3 family protein (.1) AT5G48800 367 / 7e-119 Phototropic-responsive NPH3 family protein (.1) AT3G08570 325 / 7e-103 Phototropic-responsive NPH3 family protein (.1) AT5G67385 323 / 3e-102 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023274 [exp] 1210 / 0 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 552 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 549 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 546 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 542 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 538 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 518 / 3e-177 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 498 / 2e-169 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 490 / 3e-166 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091100 [exp] 955 / 0 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 936 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 613 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 607 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 598 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 523 / 3e-179 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 514 / 7e-176 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 508 / 2e-173 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 500 / 8e-170 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 410 / 9e-135 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10038531 pacid=23158365 polypeptide=Lus10038531 locus=Lus10038531.g ID=Lus10038531.BGIv1.0 annot-version=v1.0 ATGGCTTGCATGAAACTGGGATCTAAGTCGGATTCCTTTCAGCGGCAGGGCCAGGCTTGGTTCTGCACAAATGAGCTCCCGACTGATATAGTGGTAGAAG TTGAGGAGATGTCTTTCCATCTTCACAAGTTTCCACTGTCCTCCAGAAGTGGGGTTATGGAGATGTTGATTGCTGAAGCTACGGAAGAGGACGAAAAATG CACCATTCGTCTCTCTGAGGTTCCCGGTGGAGCTAAAACATTCGAGCTTGTTGCCAAGTTCTGCTATGGGGTAAAGCTCGAACTCACTGCTTCAAATGTC GTATACCTCCGTTGTGCTGCCGAGCACCTCGAAATGACCGAAGATTACTTCGAGGGAAATCTGATATCCCAGACCGAGACATTCTTAAACCATGTCGTGC TTCGAAATTGGAAAGACTCGCTTAAGGCTCTGCAAACTTGTGTTGATTCCATTCTTTCCTATGCCGACAGACTTAATGTCACAAAGAGGTGCATCGATTC GCTAGCTTCGAAAGCTGGTAGAGATCCCAACTTGTTTGGATGGCCGGTAATGGAGCATGGTCCTATACAGAGCCCCGGGGGGAGTGTGTTATGGAACGGG ATAAGCACAGGGGCTAGACCGAAAAATCCGAGTACGGATTGGTGGTACGAGGATGCATCGAGTTTAAGCTTAACACTCTACAAGAGGTTGATTTGTACTA TGGAATCTCGCGGTATTAAAGCCGAGATAATTGCTGGATCTGTCGCATTCTATGCGAAAGTGTACCTCCCGGGTCTGAATAGGCGTCAAGGTGCTTCTAA CGAGTCTAGCGCTCGACTGATGCCATTGGCTTTGGGAACTCAAGCATCAGAGGAAGACCAGCGAACTTTACTTGAAGAGATCGACAGATTGCTACCAACA CAAAAGTGTCTAGTTTCGACGAGATTTCTCTTCAGCTTACTGAAGACGGCAATGATTCTCAAGGCGGACCCGTCCTGTTTGTCGAGTTTAGAGAAGAGAA TAGGGATGCAGCTCGATCAAGCAACTCTGGATGATCTTCTGATGCCTAACTTCTCACATTCGATGGAGACCCTTTACAACGTGGACTGCATGCAGCGAAT TCTCGAACATTTCGTCGCCATGGATCAGATCACCGGTGGTGGTGGGGCTTCTCCCGGTTCGGTTGCCGACAGTCAGTTGATTGGCTCCCCATCTTTGACT CCGATCACAACGGTGGCCAAGTTGATCGACGGATACCTCGCAGAGGTCGCCCCGGACGTTAATTTGAAGCTCTTGAAGTTTCAGGAACTTGCTGCTGCTG TTCCTGAATACGGGAGGCCTCTCGACGATGGCCTTTATCGTGCCATAGATATTTACTTGAAGTCTCATCCATGGCTATCGGAGGCCGAGAGAGAACAACT CTGCAGGTTGATGGACTGCCAGAAGCTTTCGTTAGAAGCGTGCACTCACGCCGCACAGAACGAGAGGTTGCCCCTAAGGGTAGTAGTCCAAGTTCTCTTC TTCGAGCAGCTTCAGCTAAGGACATCCATTGCCGGGTGTTTCATCGTATCGGGGACTCTGGACGGGGGGTCGAGACAGTTGAGGGGCGGCACGGTGTCAG GGGAAGGAGGAGGAGGATGGGCTTCAGCAGTGAGAGAGAATCAAGTGCTGAAAGTAGGGATGGACAACATGAGGATGAGGGTGTCAGAGCTCGAGAAGGA ATGCACCACAATGAGGCAGGAAATCGAGAAACTGGGACGAAACAACAAAGTAGCAGCCGGTGGTGGTCTTCCTGTTGTTTCTTCTTATGGATCGAGTGCG TGGGGGAACGTGTCGAGGAAACTCGGGTTGAAGGCCAAGTCGCAAATGTGCAGCGCTCAAGAAGGGTCGGTGAGCAGCCAGACCGAGAAAGCGAAGCAGA GGCGTCCCAAGCACAAGAAAATCTTGTTCCCAGATGGGTAG
AA sequence Show only first row Show all	>Lus10038531 pacid=23158365 polypeptide=Lus10038531 locus=Lus10038531.g ID=Lus10038531.BGIv1.0 annot-version=v1.0 MACMKLGSKSDSFQRQGQAWFCTNELPTDIVVEVEEMSFHLHKFPLSSRSGVMEMLIAEATEEDEKCTIRLSEVPGGAKTFELVAKFCYGVKLELTASNV VYLRCAAEHLEMTEDYFEGNLISQTETFLNHVVLRNWKDSLKALQTCVDSILSYADRLNVTKRCIDSLASKAGRDPNLFGWPVMEHGPIQSPGGSVLWNG ISTGARPKNPSTDWWYEDASSLSLTLYKRLICTMESRGIKAEIIAGSVAFYAKVYLPGLNRRQGASNESSARLMPLALGTQASEEDQRTLLEEIDRLLPT QKCLVSTRFLFSLLKTAMILKADPSCLSSLEKRIGMQLDQATLDDLLMPNFSHSMETLYNVDCMQRILEHFVAMDQITGGGGASPGSVADSQLIGSPSLT PITTVAKLIDGYLAEVAPDVNLKLLKFQELAAAVPEYGRPLDDGLYRAIDIYLKSHPWLSEAEREQLCRLMDCQKLSLEACTHAAQNERLPLRVVVQVLF FEQLQLRTSIAGCFIVSGTLDGGSRQLRGGTVSGEGGGGWASAVRENQVLKVGMDNMRMRVSELEKECTTMRQEIEKLGRNNKVAAGGGLPVVSSYGSSA WGNVSRKLGLKAKSQMCSAQEGSVSSQTEKAKQRRPKHKKILFPDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	6.1	0.9379
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	8.1	0.9306
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	10.6	0.9077
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10036062 [exp]	11.1	0.9308
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	13.3	0.9304
AT3G21710			unknown protein		Lus10027176 [exp]	17.0	0.9247
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10006980 [exp]	18.7	0.9237
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	18.8	0.8964
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	19.1	0.9016
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	19.4	0.9046

Compare expression of checked genes

Lus10038531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.