Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34680 1369 / 0 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT5G19680 62 / 1e-09 Leucine-rich repeat (LRR) family protein (.1) AT1G78230 60 / 1e-08 Outer arm dynein light chain 1 protein (.1) AT4G03260 58 / 5e-08 Outer arm dynein light chain 1 protein (.1.2) AT2G26330 47 / 0.0001 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G22320 46 / 0.0001 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT2G33080 45 / 0.0003 AtRLP28 receptor like protein 28 (.1) AT1G64210 45 / 0.0004 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 44 / 0.0008 AtPEPR2 PEP1 receptor 2 (.1) AT2G33020 44 / 0.0009 AtRLP24 receptor like protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023270 [exp] 1069 / 0 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 61 / 7e-09 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10033444 [exp] 61 / 7e-09 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10039729 [exp] 60 / 1e-08 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10020932 [exp] 57 / 1e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10034258 [exp] 54 / 1e-07 AT5G58300 201 / 2e-61 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005198 [exp] 55 / 3e-07 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013308 [exp] 54 / 8e-07 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10012715 [exp] 53 / 8e-07 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357700 [exp] 1508 / 0 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090150 [exp] 879 / 0 AT2G34680 840 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 553 / 1e-174 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 60 / 1e-08 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 59 / 3e-08 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.005G164000 [exp] 58 / 4e-08 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 57 / 1e-07 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.018G086200 [exp] 54 / 3e-07 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.013G150300 [exp] 52 / 2e-06 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.006G163900 [exp] 52 / 3e-06 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038534 pacid=23158142 polypeptide=Lus10038534 locus=Lus10038534.g ID=Lus10038534.BGIv1.0 annot-version=v1.0 ATGGAGGAACCACCGCCTGTGGTATCATCCGGCGAAGACCCAGTTCAGATGCCGCCTATGGAGGTTACTGTAAGTCCTAATGAGTCCACCAAGAAGGTTG CAAAAAGACCCACCAAACCTATCATTTCTCCGACCTCAACACTGCTGGCACCTAAAGGTTTGGTTAGAAAGAGGGCTGAATCCAGAGAAAGTCTGGATTC AAGCACAAATGCAGGGAAGCAGAGCACTATTGGTAATACTTCTTCCTCTCGTACTGCCACTGCAGTTCCAGCCATTAGACGGAACAGTACTGGTGGAGTG TCTACTGAGAAACGTGGGCAGAATGGGGCTTCTGTTGTCGGTGCTGGGAAAAAGAGTAGTGCTGGGGTGGATCCGGTAAGGAAGTCCCTTCCAGAGCTGA GAAGGAGTTCCTTACCTTCTGTAGCTACAAAACCCACAAGAGGATCAAGTGTTTCAGGGATTAGGAAATCGGTTCCCATGTCACCTTCGGAAAAGAGTCT GAGGACTTCAATGGCTTCTGATATCAGTATCTCGGGGAAAGCCCGCAAGCCTTCAGTTAAGCCAACATTGTCGGCCTCTTCTTCTTCATCTTCTGTGAAG AGAGTTCCATCTGCATCACTTGAGAGCAGTGCCAGTAGTGTGACTAGGAATACGGTATCAAAAGTTTCACAGTCTTCGGCTCGTTCCCCGTCAGTTTCTA GTGGATTACGTAATGGATCATTGTCAACATCCTTGGATACCGGTTCCAGCTTGTCTGCAAGGAGGAGAGCGGGCACGCCTGAGAGTCGGGATTCTCGGTT CATTGCACTGCCACAAATTGAGCTTAAAGGTGGTGATGATGTGAGATTGGATCTTAGGGGTCACAGAGTTCGCACCCTCAATGCTAATGGATTAAACTTG TCAGCCACTTTAGAGTTTGTTTATCTTAGAGACAATCTGTTATCTACACTTGACGGAATTGAGATATTGACGCGTGTAAAGGTTCTTGATTTGAGTTTCA ATGAGTTTAAGGGTCCTGGATTTGAGCCTCTTGAGAATTGTACTGCCTTACAGCAACTGTATCTTGCTGGAAATCAGATCACATCACTTATGAGCCTTCC GCAGCTACCTAACTTGGAGTTCCTGTCTGTTGCTCAAAACAAGCTGAAGTCACTTGCAATGTCAAGTCAACCTCGATTACAGGTTTTAGCTGCAAGCAAA AATAAAATATCAACTCTTAAGGGTTTCCCGTATCTTCCTGCCCTTGAGCATTTACGAGTTGAGGAAAATCCTATACTTAAGGTGCCCTATTTAGAAGCTG CTTCTATATTGCTTGTTGGTCCTACATTGAAAAAGTTCAATGATAGAGGTTTCACACGTGAGGCGATAACAATAGCCAAGCGGTATCCAGCATGCACAGC TTTGTGTATTAGAGATGGCTGGGAATTTCGTCGTCCCGAGAATGTCTCAGGACAAGAAGGAGAATCTATGTCAGTCATGACTCATGCAGTTAAGCGAGTT CCAGAAGCTTTTATTTGCCCCACTAATTGTCCTGTTCCTTTCCCCCCAACATTAGCTCCTCCTAAGGTATCAAATGTTAAGATAATTGGCGATTTAAGAG AAAACAGTAAGATTACTGTTACTGGCATTGTCACCGGAGGAACAGAAGGCTCTAGCAGGGTACAATGGTTCAAAACGACTTCTTCAACATTTGATGATGA GAATGGTCTTGAAGCACTGAGCACGTCCAAGATTGCCAAGGCATTTCGGATTCCTCTTGGAGCGGTTGGCTATTACATTGTTGCAAAATATACTCCGATG ACTTCAGATGGGGAATCTGGTCAACCAGCATATGTAATGTCAGAAGCTATCATCGAAACCCTTCCTCCGAGCCTAAACTTCTTGTCTATAACTGGTGACT ACACTGAAGGTGGAATATTGACCGCATCATATGGCTACGTGGGGGGTCATGAAGGAAAAAGTATATATAATTGGTATCTTCATGAGGTAGAAACAGACTC TGGTATCTTGATACCTGAGGGTTGTGGAGTCCTTCAATATCGGGTTAACAAAGATGCAATTGGGAAATTTGTATCCTTTGAATGTGTCCCGGTGCGTGAT GATGATATTGTAGGAGAACCTAGGAGTTGCATGGGCCAGGAACGTCTTCAACCAGGAAGCCCACGATTGCTCGCTCTGCAAATTGTTGGAAGTGCCGTTG AAGGAACTAAACTAAGTATCAGCAAAAAGTACTGGGGTGGTGAAGAGGGAGACTCAGTTTTTCGTTGGTTACGGATTGCGTCAGATGGTACCCAATTTGA AATTCCTGGTGCCAGTGCTTCTTCATACACCATGGTGTTTGATGATATTGGTTACTATGTATCTGTTTCATGCGAACCTGTCAGAAGCGATTGGGCACGT GGTCCTGTTGTCCTCTCTGAACAAGTTGGACCGATCGTACCTGGCCCTCCAACTTGCCAATCCTTAGAGTTCCTTGGATCTATGATTGAGGGGCAGCGAG TCAGCTTCATTGCTACTTACACAGGAGGGGACAGGGGAAATTGCTGCCATGATTGGTTTAGGGTGAGAAGTAATGGTGTCAGGGAGAAACTTAGCGATGA TGACTTTCTGGATTTGACGTTAGAAGATGTTGGAAAACATATCGAATTAATCTACTTTCCAATTCGCAAAGATGGTGCACGAGGAAGTCCTAAAACCATT AAGTCTAATATCATTGTTCCCGCTGATCCAGTTGGACTGGAACTTAAGATTCCAGATTGTTGTGAGGAACTGGAGGTGATTCCACATAAACAGTATTTTG GTGGGCCGGAAGGTCCAGGGGAGTATGTTTGGTACCGAACTAATGACAAGCTCCACGGACAGGCATTGATGGACATATCTCATGCATCCGAAGATGTTGT TATTTGTGGAAAAACCTTAGCCTACACTCCCTCACTTGAAGATGTTGGATCTTTTTTGGCTTTATACTGGGTGCCTGTACGTGCTGATGGCAAACGTGGA AAGCCATTGGTTGCTATTTCCAGCTCTCCTGTTAACCCAGGGCTTCCGAGCGTTTCCAAGGTTCATGTCAAGGAGTTATCATCAGGTGCCTATTGTGGAG AAGGGGTATATTTTGGTGGGTATGAGGGGTCCAGCCGGTTTAGCTGGTATAGAGAAACCAACGAGGGAAAAATGATCCTCATTGATGGAGCTATCGCTGT AACTTATGAAGTCACGGACTCTGATTACACATGCCGTTTGTTATTTGGATACACCCCAGTTCGCTCAGATTCAGTTGTGGGAGAACTTGTGTTGTCAGCC CGAACTGACATTATCCTCCCTGAACTTCCTAGAGTCAAAATGCTTGCTCTCACTGGAAAGGCAATAGAAGGAGACATACTTACTGCGGTTGAGGTCATTC CACAGAGTTTGACTCAACAATCCGTTTGGAGCAAATACAAAAAGAATGTCAAATATCAATGGTTCCGTTCCTCTGAGTCAGGAGAGAGCAACTGTTTTGA GCCATTAACTACTCAGGTGTCATGCTGTTACAAGGTGCGATTGGAGGACATTGGTCGATGTTTGAGATGCGAATGTATTGTTTATGATGTCTTTGGAAGG TCAAGCGAGCCAGCATATGCTGTGACTGAAGCTGTATTACCAGGAATTCCTAGAATGCATAAGCTGGAGATCGAGGGAAGGGGTTACCATACTAACCTAT ATGCTGTTCGGGGTGTGTATACTGGTGGAAAAGAAGGAAAAAGTAGAATCCAGTGGCTAAGATCAATGGTTGGGAGTCCTGATCTCATCTCCATCCAAGG AGAGGTCGGAAGGATGTACGAAGCTAATGTTGATGATGTAGGGTATAGGCTAGTGGCTATTTATACCCCAATTAGGGAAGATGGCGTAGAGGGGCAACCT GTATCTGCATCAACCGAGCCGATTGCTGTTGAGCCTGATGTTTTAAGAGAAGTAAAACAGAAACTTGACGTCGGGTCTGTGAAGTTTGAGGTATTATGCG ACAAGGACCGTTCATCCAAGAAGTTTACGGGAGAAGGAAGTCTCGAGAGAAGGGTTTTGGAGATCAACAGAAAGAGAGTGAAGGTTATGAAGCCTGGCTC CAAGACTTCATTTCCAGCTACCGAAATTCGTGGAACTTATACTCCTCCTTTCCATGTGGAGCTCTTCCGAAACGACCAACACCGGCTAAGAATCGTAGTG GACAGCGAGAACATAGCAGACTTGATGGTGCACTCGCGGCACTTGAGGGACATAGTTGTTCTTGTGATCAGAGGGCTAGCTCAGAGATTCAACAGTACAT CTCTCAATTCTCTCCTCAAGATAGACACATGA
AA sequence Show only first row Show all	>Lus10038534 pacid=23158142 polypeptide=Lus10038534 locus=Lus10038534.g ID=Lus10038534.BGIv1.0 annot-version=v1.0 MEEPPPVVSSGEDPVQMPPMEVTVSPNESTKKVAKRPTKPIISPTSTLLAPKGLVRKRAESRESLDSSTNAGKQSTIGNTSSSRTATAVPAIRRNSTGGV STEKRGQNGASVVGAGKKSSAGVDPVRKSLPELRRSSLPSVATKPTRGSSVSGIRKSVPMSPSEKSLRTSMASDISISGKARKPSVKPTLSASSSSSSVK RVPSASLESSASSVTRNTVSKVSQSSARSPSVSSGLRNGSLSTSLDTGSSLSARRRAGTPESRDSRFIALPQIELKGGDDVRLDLRGHRVRTLNANGLNL SATLEFVYLRDNLLSTLDGIEILTRVKVLDLSFNEFKGPGFEPLENCTALQQLYLAGNQITSLMSLPQLPNLEFLSVAQNKLKSLAMSSQPRLQVLAASK NKISTLKGFPYLPALEHLRVEENPILKVPYLEAASILLVGPTLKKFNDRGFTREAITIAKRYPACTALCIRDGWEFRRPENVSGQEGESMSVMTHAVKRV PEAFICPTNCPVPFPPTLAPPKVSNVKIIGDLRENSKITVTGIVTGGTEGSSRVQWFKTTSSTFDDENGLEALSTSKIAKAFRIPLGAVGYYIVAKYTPM TSDGESGQPAYVMSEAIIETLPPSLNFLSITGDYTEGGILTASYGYVGGHEGKSIYNWYLHEVETDSGILIPEGCGVLQYRVNKDAIGKFVSFECVPVRD DDIVGEPRSCMGQERLQPGSPRLLALQIVGSAVEGTKLSISKKYWGGEEGDSVFRWLRIASDGTQFEIPGASASSYTMVFDDIGYYVSVSCEPVRSDWAR GPVVLSEQVGPIVPGPPTCQSLEFLGSMIEGQRVSFIATYTGGDRGNCCHDWFRVRSNGVREKLSDDDFLDLTLEDVGKHIELIYFPIRKDGARGSPKTI KSNIIVPADPVGLELKIPDCCEELEVIPHKQYFGGPEGPGEYVWYRTNDKLHGQALMDISHASEDVVICGKTLAYTPSLEDVGSFLALYWVPVRADGKRG KPLVAISSSPVNPGLPSVSKVHVKELSSGAYCGEGVYFGGYEGSSRFSWYRETNEGKMILIDGAIAVTYEVTDSDYTCRLLFGYTPVRSDSVVGELVLSA RTDIILPELPRVKMLALTGKAIEGDILTAVEVIPQSLTQQSVWSKYKKNVKYQWFRSSESGESNCFEPLTTQVSCCYKVRLEDIGRCLRCECIVYDVFGR SSEPAYAVTEAVLPGIPRMHKLEIEGRGYHTNLYAVRGVYTGGKEGKSRIQWLRSMVGSPDLISIQGEVGRMYEANVDDVGYRLVAIYTPIREDGVEGQP VSASTEPIAVEPDVLREVKQKLDVGSVKFEVLCDKDRSSKKFTGEGSLERRVLEINRKRVKVMKPGSKTSFPATEIRGTYTPPFHVELFRNDQHRLRIVV DSENIADLMVHSRHLRDIVVLVIRGLAQRFNSTSLNSLLKIDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	4.5	0.9302
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Lus10039199 [exp]	5.3	0.9242
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	5.9	0.9042
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	6.3	0.8973
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024773 [exp]	6.6	0.8781
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	7.1	0.8907
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	9.8	0.8958
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	12.0	0.8944
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	15.6	0.9154
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	16.7	0.8667

Compare expression of checked genes

Lus10038534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.