Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51980 375 / 2e-128 ARM repeat superfamily protein (.1) AT5G02150 79 / 5e-16 Fes1C Fes1C (.1.2) AT3G09350 74 / 2e-14 Fes1A Fes1A (.1.2.3) AT3G53800 64 / 6e-11 Fes1B Fes1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023269 [exp] 667 / 0 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1) Lus10023786 [exp] 65 / 3e-11 AT3G09350 522 / 0.0 Fes1A (.1.2.3) Lus10003961 [exp] 65 / 4e-11 AT3G09350 523 / 0.0 Fes1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072200 [exp] 444 / 5e-155 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1) Potri.003G158701 [exp] 268 / 5e-88 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1) Potri.016G100500 [exp] 74 / 2e-14 AT3G09350 472 / 3e-167 Fes1A (.1.2.3) Potri.006G088000 [exp] 71 / 3e-13 AT3G09350 516 / 0.0 Fes1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08609 [flax] [poplar] Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence Show only first row Show all	>Lus10038535 pacid=23158224 polypeptide=Lus10038535 locus=Lus10038535.g ID=Lus10038535.BGIv1.0 annot-version=v1.0 ATGGTCCTCCGGAGTTCAGTGTTTTTTCATAATGGCGCTCTTGGTGGCGGGATATTGGCGCTTTTGGCGGTCACGTTGATGTTGACTGTGTCTGGCGTAG CTGGAGACGAGCAATTAAACGAGACATCTTCTGCATCGAGTTTACTTTGGACAGCAGCGAAGGAAGAGTCTAGTGATAACTTGATGCTCAATGCTGAACC AGTCAACGAATCCTCCTCTCTGGCCCCATCTGTTGTGGGCGAACAAGATGAACTTGATGGTGGCTTTTCTTCTCTTGAAGGGATGCTGCAGTGGGCTATA GGTCATTCTGATCCAGATGCATTGAAGCAATCTGCACAAGATGCTCAGCGTTTATCTGCTGCAGAACTAAAGAAGCGCCAAATGGAAATTAAGGAACTGA TGGAGAAGATGAAAATGCCTTCCGATGCACAGCTAATGCAGACTGCCTTAAATGACTTGAATAATTCCTCTCTACCTACGGAAGATCATAACCGTGCCCT ACAGGAGCTTCTTATTCTTGTTGAGCCGATTGATAATGCCAATGATTTAAACAAACTTGGCGGACTTGCGCTGGTGATTCGAGAGCTTAATCATCCTGAA TCTGAAATCAGGACGTTATCTGCATGGGTCCTTGGCAAGGCTAGTCAAAATAACGCAGTTGTGCAGAAACAGGTTTTGGAACTTGGGGCACTATCAATTC TAATGAAGATGGTGTCATCTAATTCCCCGGAAGAAGCAATCAAAGCGCTCTATGCTGTATCAGCATTGATTCGTAACAACCCTGTTGGTCAAGACTTGTT CTATTCCGAAGCTGGAGATAAGCTACTTTTGGATATGTTGCGCAACTCGAGTTCCAATATCAGACTCTGTAAGAAAGCAGTCTCTCTCGTTTCCGATCTC GCTGAAAATGAATTAGAATATCCCGACAGAGCAGAGCATCCTTGTTTCCAGAATCATCTGTTCTTGAAGTCCATTGTTAATTTGACACTGTCAGTCGACG TTGATCTCCAGGAAAAGGCACTTTTAGCAATCAAGAACCTCCTGCAGCTAGAAACTGCAAATGCGGTCATTTTTAAGGACTCTTGTGGATTGGACGCTGC TTTGGAGAGAATGAGACAGCAACTGCTCAGTATAACGTTGGAGGATTCAGATAGTGGAGACTTTGTAGTTACTTTGAAGACATTGCTCGGAGAAGTAGAA TCAACTTTCCACAGAAAGCTTGGAGAAGAGATGAGAGTTGGCCAATGA
AA sequence Show only first row Show all	>Lus10038535 pacid=23158224 polypeptide=Lus10038535 locus=Lus10038535.g ID=Lus10038535.BGIv1.0 annot-version=v1.0 MVLRSSVFFHNGALGGGILALLAVTLMLTVSGVAGDEQLNETSSASSLLWTAAKEESSDNLMLNAEPVNESSSLAPSVVGEQDELDGGFSSLEGMLQWAI GHSDPDALKQSAQDAQRLSAAELKKRQMEIKELMEKMKMPSDAQLMQTALNDLNNSSLPTEDHNRALQELLILVEPIDNANDLNKLGGLALVIRELNHPE SEIRTLSAWVLGKASQNNAVVQKQVLELGALSILMKMVSSNSPEEAIKALYAVSALIRNNPVGQDLFYSEAGDKLLLDMLRNSSSNIRLCKKAVSLVSDL AENELEYPDRAEHPCFQNHLFLKSIVNLTLSVDVDLQEKALLAIKNLLQLETANAVIFKDSCGLDAALERMRQQLLSITLEDSDSGDFVVTLKTLLGEVE STFHRKLGEEMRVGQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51980			ARM repeat superfamily protein...		Lus10038535 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	4.0	0.8034
AT5G63000			Mitochondrial import inner mem...		Lus10039963 [exp]	4.6	0.8315
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	25.0	0.8127
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	27.4	0.7917
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	36.8	0.7971
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	43.8	0.7865
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	54.1	0.7478
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	70.6	0.7329
AT1G20770			unknown protein		Lus10030736 [exp]	77.5	0.7283
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	77.8	0.7671

Compare expression of checked genes

Lus10038535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.