Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37990 336 / 4e-115 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 332 / 2e-113 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37970 328 / 7e-112 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT2G21730 323 / 1e-109 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G39330 322 / 3e-109 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 314 / 3e-106 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT3G19450 214 / 4e-67 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G72680 205 / 1e-63 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT4G34230 191 / 2e-58 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G63620 67 / 2e-12 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023268 [exp] 508 / 0 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10035956 [exp] 380 / 2e-132 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 377 / 4e-131 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10002089 [exp] 304 / 3e-102 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 268 / 2e-88 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10003854 [exp] 267 / 2e-88 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 263 / 2e-86 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10027864 [exp] 239 / 5e-77 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 238 / 1e-76 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065300 [exp] 372 / 3e-129 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.009G063400 [exp] 367 / 6e-127 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 366 / 9e-127 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G268600 [exp] 363 / 9e-126 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G078300 [exp] 360 / 2e-124 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G307200 [exp] 343 / 8e-118 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 301 / 4e-101 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.002G018300 [exp] 259 / 8e-85 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.009G063300 [exp] 222 / 6e-72 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G024300 [exp] 223 / 6e-71 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038536 pacid=23158395 polypeptide=Lus10038536 locus=Lus10038536.g ID=Lus10038536.BGIv1.0 annot-version=v1.0 ATGGCTGGAGAAGAAGAGCAAGAGCAAGTTCAAGCCTTTGGATGGGTTTCTCCCTTCCACTTCTCTCCGAGGGCTACGGGGGAGAAGGACGAGCAATTCA AAGTGCTCTACTGTGGAATCTGTCACTCGGATCTCCACATGCTGAAAAACGAATGGGGGACGTCGATCTACCCGCTCGTTCCGGGCCATGAGATCGTCGG CCTAGTAACTCGAGTGGGGAAGAATGTCGAGAAATTCAAAGTCGGGGACTGGGTGGGCGTCGGTTGCATGGTCGGATCATGCCGCAATTGCTACAACTGC TCCAACGACCTCGCAAACTACTGCCCCGATTTCGTCCTAACATACTCCGCGCCCGCCAACCTCGTCCCCACGACGACCTACGGAGGCTGCTCGGACACCA TGGTCTGCGACGAGCACTTTGTGGTCCAAATCCCGGACACCATCCCTATGGACACGGCCGCTCCTTTGCTGTGCGCCGGGATCACTGTTTACAGCCCGAT CAGGGTTGGGCGGATTGAGATGACGGTCAAGTTTCTAAAAGCAATAGGGGTTAGAGTGATAGTGATCAGTACTTCCAATGGGAAGAAACCTGAAGCCCTG GAGAGGCTTGGTGCTGACTCGTTCTTGGTTAGTAAAGATCCAGAGGAGTTGAATGCGACGGTCGGGAAATTGAATGGAATTATTAATATGGTTTTAGCAA GTCAGTCGTTGTTGCCTTTGATCGGGTTGTTGAAGACTAACGACAAACTGATCTTGGTGGGTGTTCCGGAGAAGCCCCACGAGTTGCTCGCTTTTCTTTT GTTGTTGGCAAAACACAACGTCATTGCCGACATTGAAGTCGTTACGATGGACTACGTGAATACCACCATGGAACGACTTACAAAGGCCGATGTCAAGTAC AGATTCGTCATCAATGTTGCCAATACTATTTAA
AA sequence Show only first row Show all	>Lus10038536 pacid=23158395 polypeptide=Lus10038536 locus=Lus10038536.g ID=Lus10038536.BGIv1.0 annot-version=v1.0 MAGEEEQEQVQAFGWVSPFHFSPRATGEKDEQFKVLYCGICHSDLHMLKNEWGTSIYPLVPGHEIVGLVTRVGKNVEKFKVGDWVGVGCMVGSCRNCYNC SNDLANYCPDFVLTYSAPANLVPTTTYGGCSDTMVCDEHFVVQIPDTIPMDTAAPLLCAGITVYSPIRVGRIEMTVKFLKAIGVRVIVISTSNGKKPEAL ERLGADSFLVSKDPEELNATVGKLNGIINMVLASQSLLPLIGLLKTNDKLILVGVPEKPHELLAFLLLLAKHNVIADIEVVTMDYVNTTMERLTKADVKY RFVINVANTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	0	1
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	2.0	0.9120
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	3.2	0.9049
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	4.0	0.8931
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	5.7	0.8752
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	6.7	0.9032
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	7.5	0.8543
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	8.0	0.8428
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	11.0	0.8589
AT1G78390		ATNCED9, NCED9	nine-cis-epoxycarotenoid dioxy...		Lus10042481 [exp]	12.1	0.8534
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	12.2	0.8844

Compare expression of checked genes

Lus10038536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.