Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34690 279 / 4e-94 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) AT4G39670 192 / 7e-60 Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023267 [exp] 406 / 3e-144 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10035024 [exp] 198 / 1e-61 AT4G39670 305 / 4e-105 Glycolipid transfer protein (GLTP) family protein (.1) Lus10034305 [exp] 183 / 8e-52 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10021685 [exp] 111 / 4e-29 AT4G39670 175 / 2e-55 Glycolipid transfer protein (GLTP) family protein (.1) Lus10041466 [exp] 81 / 3e-16 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G051800 [exp] 305 / 2e-104 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.016G055300 [exp] 296 / 1e-100 AT2G34690 295 / 1e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.008G119600 [exp] 211 / 1e-66 AT4G39670 307 / 1e-106 Glycolipid transfer protein (GLTP) family protein (.1) Potri.005G188600 [exp] 50 / 8e-07 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 42 / 0.0003 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10038537 pacid=23158492 polypeptide=Lus10038537 locus=Lus10038537.g ID=Lus10038537.BGIv1.0 annot-version=v1.0 ATGTGGATGTGGACTATTAATTACCATGAAGAACGAGGTCATACGACCAAGACCATTATCGGACGACCTATTAAAAGGTTAAAGTCAGTTGGGAAAAAGT TCGCACTAGTTGAAAGAGCCACAACTTTCTTAGTGGTTGTGCCCGGGTTAGCCATCATCGAAGTGCCCTTGTCGCATTCCGCTGTACTGGCAGTCGCACC AGGGGCAACCCAACATCACAAGAATACTCATTGCGTTACAGCAAGGGGGAGGGAGGAGACATTCCCCGGAGAAAAATTCTCTCAGGCGATCCTTGCTCCG TCGACGAGCACATTTCATAAGTCAAAGTCGTCCCGATCAGAACTTTTCCTGATCGCCGATACAATGGCGGATGCCGTGGGTGACAAGCCTCTCAGAATGA TGGCGGTGGCGTTCAAGGAGCTCGAGGCCACTGTGAACTCCTCCCAGACCTCCGCTGGAGACTTGGAAATCGCTCCCTTCTCTCGCGCAGCTTCTCTCGT CTCGCCTCTCTTCGGCTGCTTAGGCATCGCCTTCAAGTTCGCTGAAATGGATTATGTTGCCAAGGTTCACGATCTCGTTGAAGCATCGAAATCAATAACA ACCTTGCCAGTCATGATGGATAAAGATATAGCGGGGAACACTGTAAGGAAAGCTGGAAGTCATACCAGGAATCTTCTGAGGGTGAAGCGTGGGCTCGACA TGGTCAATGTGCTGTTTGAGCATATTCTTGCTACACAAGGGGAATCTTTAAAGGACCCAGCTTCAAAGGCTTATACTCAGGTATTTGCTCCGCACCATGG GTGGGCTATCCGGAAAGCTGTTGCTGCAGGGATGTTTGCCCTTCCTACAAGAACACAGCTCATGAGGAAGCTTAACGAGGATGACCATTTCACTTGTTCT GTCAAAAGTCATGCTAGCTACATCATCCAAACCTATTTCTCTGTGTTCACTTTTGCAGAGGCTTCAGCAAAGATTCAAATGCAGAGTTTCATCGCTACTT CCAGGCCAGTGATTGTGTACATTGATAGACTTTTCCAGACTAGAGAACTGGGGATAGATTGGTGA
AA sequence Show only first row Show all	>Lus10038537 pacid=23158492 polypeptide=Lus10038537 locus=Lus10038537.g ID=Lus10038537.BGIv1.0 annot-version=v1.0 MWMWTINYHEERGHTTKTIIGRPIKRLKSVGKKFALVERATTFLVVVPGLAIIEVPLSHSAVLAVAPGATQHHKNTHCVTARGREETFPGEKFSQAILAP STSTFHKSKSSRSELFLIADTMADAVGDKPLRMMAVAFKELEATVNSSQTSAGDLEIAPFSRAASLVSPLFGCLGIAFKFAEMDYVAKVHDLVEASKSIT TLPVMMDKDIAGNTVRKAGSHTRNLLRVKRGLDMVNVLFEHILATQGESLKDPASKAYTQVFAPHHGWAIRKAVAAGMFALPTRTQLMRKLNEDDHFTCS VKSHASYIIQTYFSVFTFAEASAKIQMQSFIATSRPVIVYIDRLFQTRELGIDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	1.0	0.9029
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	2.4	0.8896
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	2.8	0.8862
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	4.0	0.8398
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	4.0	0.8910
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	4.5	0.8739
AT4G00420			Double-stranded RNA-binding do...		Lus10024106 [exp]	4.5	0.8346
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	5.5	0.8514
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	6.2	0.8172
AT3G50910			unknown protein		Lus10025996 [exp]	6.9	0.8139

Compare expression of checked genes

Lus10038537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.