Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05390 624 / 0 ATRFNR1 root FNR 1 (.1.2) AT1G30510 603 / 0 ATRFNR2 root FNR 2 (.1.2.3) AT1G20020 286 / 1e-93 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G66190 281 / 6e-92 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT4G30210 72 / 3e-13 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 63 / 2e-10 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G02280 54 / 1e-07 Flavodoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023266 [exp] 686 / 0 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10028451 [exp] 285 / 3e-93 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 281 / 1e-91 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10025485 [exp] 74 / 4e-14 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 70 / 1e-12 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 70 / 2e-12 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 67 / 8e-12 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10017589 [exp] 55 / 7e-08 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10032842 [exp] 44 / 0.0002 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G371900 [exp] 621 / 0 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G112900 [exp] 282 / 4e-92 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 275 / 3e-89 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.002G106566 [exp] 72 / 5e-14 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G153800 [exp] 71 / 9e-13 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 67 / 9e-12 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 63 / 2e-10 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 62 / 4e-10 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038538 pacid=23158235 polypeptide=Lus10038538 locus=Lus10038538.g ID=Lus10038538.BGIv1.0 annot-version=v1.0 ATGGCTCACTCTGCGGCGGCTTCTCAGGTATCATTTTTCAATTCAAGCTCTGTTCATTTTGCTCTGTTGGATGTTTGCTTCTGTTGGGTTTTTGTTGACG AATTTCGTGATGGTGGATTACTACAGATTGCAGCAGCGATTGTTCCTGCTGGGAGCGACTCAGGTCTCAGAAGATCAGTTCTTAAGACACACAGTATCAG CTTCAGTGACAGATCATGGACTCCTGCTCTGTCGTTGGACGTGAAATCGAAGTATGGCCGGTTTCAAAGTCGGAACATAGTGTGCATGTCTGTGCAACAG GCCACCAGCAAATCCAAGGTTGAGGTTGCACCTTTAGAGCTTGAGGGTGCCAAAGATCCACCTCTAAACATTTACAAGCCTAAGGAGCCTTACACGGCCA CCATTGTCTCTGTCGAGAGGCTCGTAGGCCCTAAAGCTCCCGGGGAGCCCTGCCATGTCTTGATTGATCATGGGGGCAACGTTCCTTACTGGGAAGGACA AAGTTATGGTGTGATCCCACCAGGCGAAAATCCGAAGAAGCCTGGCGCTCCCAATAATGTCCGGCTGTATTCGATTGCATCGACTAGGTACGGAGACAAT TTCGATGGCAGGACTGCCAGCTTATGTGTTCGTCGTGCTGTCTACTACGATCCCGAGACCGGGAAGGAGGATCCTTCAAAGGCTGGTGTTTGCAGCAATT TCCTTTGTGACTCGAAGCCTGGAGATAAGATTAAAATAACTGGACCTGCTGGGAAGATCATGCTATTGCCAGAGAACGACCCGAAAGCCACTCACATTAT GATCGCAACTGGCACGGGAGTTGCCCCCTACAGGGGTTACCTCCGACGAATGTTCATGGAGTCCGTCCCTACATTCAAGTTCCAAGGCTTGGCGTGGCTT TTCCTCGGGGTGGCCAACAACGACAGCCTCCTGTACGACGAGGAGTTCACCAAGTACCGCCAGCAATACCCGGACAACTTCCGGTACGACAAGGCCCTCA GCAGGGAGGAGAAGAACAAGAACGGAGGCAAAATGTACGTCCAGGACAAGATAGAGGAGTACAGCGACGAGATCTTCAAGATGCTGGACGAAGGAGCTCA CATCTACTTCTGCGGGCTGAAAGGGATGATGCCGGGGATTCAGGAGACGTTGAAGAGAGTAGCGGAAGGGAGAGGAGAAAGCTGGGAGGCGAAGCTGTCT CAGCTGAAGAAGAACAAGCAGTGGCATGTTGAAGTCTACTGA
AA sequence Show only first row Show all	>Lus10038538 pacid=23158235 polypeptide=Lus10038538 locus=Lus10038538.g ID=Lus10038538.BGIv1.0 annot-version=v1.0 MAHSAAASQVSFFNSSSVHFALLDVCFCWVFVDEFRDGGLLQIAAAIVPAGSDSGLRRSVLKTHSISFSDRSWTPALSLDVKSKYGRFQSRNIVCMSVQQ ATSKSKVEVAPLELEGAKDPPLNIYKPKEPYTATIVSVERLVGPKAPGEPCHVLIDHGGNVPYWEGQSYGVIPPGENPKKPGAPNNVRLYSIASTRYGDN FDGRTASLCVRRAVYYDPETGKEDPSKAGVCSNFLCDSKPGDKIKITGPAGKIMLLPENDPKATHIMIATGTGVAPYRGYLRRMFMESVPTFKFQGLAWL FLGVANNDSLLYDEEFTKYRQQYPDNFRYDKALSREEKNKNGGKMYVQDKIEEYSDEIFKMLDEGAHIYFCGLKGMMPGIQETLKRVAEGRGESWEAKLS QLKKNKQWHVEVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	1.0	0.9826
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	1.4	0.9664
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	2.8	0.9555
AT5G15320			unknown protein		Lus10018064 [exp]	3.7	0.9575
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	4.6	0.9462
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	5.0	0.9589
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	5.3	0.9626
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	5.5	0.9495
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	6.7	0.9554
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.9	0.9577

Compare expression of checked genes

Lus10038538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.