Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21160 491 / 3e-176 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 484 / 1e-173 AGD13 ARF-GAP domain 13 (.1) AT3G07940 320 / 4e-108 Calcium-dependent ARF-type GTPase activating protein family (.1) AT1G70800 136 / 3e-39 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 134 / 1e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 134 / 3e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70790 134 / 5e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G48590 132 / 7e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G17980 131 / 4e-37 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 130 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023265 [exp] 660 / 0 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10039538 [exp] 323 / 7e-107 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 323 / 9e-107 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 325 / 8e-106 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 317 / 5e-102 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038745 [exp] 139 / 4e-40 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10039113 [exp] 137 / 1e-39 AT5G47710 239 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009684 [exp] 139 / 2e-39 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 138 / 9e-39 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G372000 [exp] 475 / 6e-170 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 474 / 8e-170 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 327 / 2e-109 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 326 / 2e-109 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G026400 [exp] 155 / 4e-45 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.008G131500 [exp] 144 / 2e-42 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 142 / 2e-41 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 135 / 6e-39 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 132 / 8e-38 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 132 / 1e-37 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10038539 pacid=23158344 polypeptide=Lus10038539 locus=Lus10038539.g ID=Lus10038539.BGIv1.0 annot-version=v1.0 ATGAGCTGTTTTTCAGATCTTCAGAAAAACCCTTCAGCTAGAAGAAAATTAAGAGACTTGCTGCAACAAAGTGATAACCGGAATTGTGCAGATTGCGGCG CTCCTGATCCCAAATGGGCGTCCGCAAATATCGGAGTTTTCCTATGCTTAAAATGCTGTAGTGTACACAGAAGCCTTGGTAGCTCAAAGGTTTTGTCAGT GACATTGGATGACTGGGCCGAAGAAGAGATCGACTCCATGATTGAAGTTGGAGGGAACGCAGCTGTCAATTCAATATACGAGGCTCATATACCTGACGGG GTTTCGAAGCCTAAACCAGATGCCAATCATGACGAGCGCGCAAAATTCATAAGATCAAAGTATGAGCTCCAAGAATTTTTGAAGGCCAGTTTGCGGATTA CATCAGGAAAGTCTGCTTCTGTCCAGCTAAGCTTCTCAAGTAGGATTGTGGATACATTCTGTAGCACAAGTACTTCAACGGATGGCATGGCAGAATTCAT TGGTTTATTGAAGGCCAAGGTGGTAAAGGGAACAAATTTGGCTGTCAGAGATATGATGTCGAGTGATCCTTACGTTGTCCTAAGTCTCGGTAATCAGACC GTCCAGACAACTGCAGTATCGAGCAACCTGAATCCGATATGGAACGAGGAACTCATGCTCTCAGTTCCCCAAGAGTTCGGTATCGTGAAGTTGCAAGTGT ACGACTACGACACATTCTCAGCGGACGACATAATGGGGGAGGCGGACATAGACCTGCACCCATTGATAAACTCGGCCACGGCGTACGGAGACCCGGAGAT GTTCGGGAACATGCAGATAGGGAAGTGGTTGAAGTCGGACGACAACGCGCTGATAGAGGATAGCACGATAAACATAGAGGACGGGAAGGTGAAGCAGCAG GTGTTTCTGAAGCTACAGAACGTGGAATCTGGAGAGATAGAAGTAGAGTTAGAGTGGTTGTCTCTGGAGCAATGA
AA sequence Show only first row Show all	>Lus10038539 pacid=23158344 polypeptide=Lus10038539 locus=Lus10038539.g ID=Lus10038539.BGIv1.0 annot-version=v1.0 MSCFSDLQKNPSARRKLRDLLQQSDNRNCADCGAPDPKWASANIGVFLCLKCCSVHRSLGSSKVLSVTLDDWAEEEIDSMIEVGGNAAVNSIYEAHIPDG VSKPKPDANHDERAKFIRSKYELQEFLKASLRITSGKSASVQLSFSSRIVDTFCSTSTSTDGMAEFIGLLKAKVVKGTNLAVRDMMSSDPYVVLSLGNQT VQTTAVSSNLNPIWNEELMLSVPQEFGIVKLQVYDYDTFSADDIMGEADIDLHPLINSATAYGDPEMFGNMQIGKWLKSDDNALIEDSTINIEDGKVKQQ VFLKLQNVESGEIEVELEWLSLEQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10038539 [exp]	0	1
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	3.0	0.8308
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	4.0	0.7865
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Lus10018560 [exp]	13.5	0.8123
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10043399 [exp]	14.2	0.6869
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	17.1	0.7776
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	23.9	0.7911
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	30.6	0.7515
AT5G10660			calmodulin-binding protein-rel...		Lus10026227 [exp]	32.7	0.7031
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	33.2	0.7566
AT3G12150			unknown protein		Lus10027799 [exp]	33.5	0.7373

Compare expression of checked genes

Lus10038539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.