Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34730 360 / 2e-111 myosin heavy chain-related (.1.2) AT5G14990 60 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023264 [exp] 1571 / 0 AT2G34730 361 / 1e-111 myosin heavy chain-related (.1.2) Lus10036529 [exp] 66 / 7e-11 AT5G14990 177 / 2e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164400 [exp] 662 / 0 AT2G34730 432 / 2e-138 myosin heavy chain-related (.1.2) Potri.001G466800 [exp] 551 / 0 AT2G34730 390 / 7e-123 myosin heavy chain-related (.1.2) Potri.010G222200 [exp] 84 / 3e-16 AT5G14990 211 / 2e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038540 pacid=23158236 polypeptide=Lus10038540 locus=Lus10038540.g ID=Lus10038540.BGIv1.0 annot-version=v1.0 ATGCAGCATTTGGATACTCTTGAGGAGAATCACCATTTGGATATGATCGACGACTTCGAATTATACATGGACGACATCAACAATCGGTTGACCATTGCGA GGATGGTGAATGTATCGGTAATGAAAGGCATGGTATCTGCAGTAGAACACGATGCAGCTGAGCAAATTGCCAAGAAAGATTTCGAATTAGCTAAACTGAA AGAAATCTTACATCCTCGTCAATTGAGGCTAAACGATCGCGAAGCCTCCTGTGGCTCGACAATGTCTGAAGAGCTTAATAGTGATAGGATAAGTGAGGAG TGTGATAGTTCACAAGGATGTGTGCAGAAGCTTACCTTAGCTGCTAGCGAGCAGTTAAAAAAGCTTAAGGTAGAAATCGACAAAGTTAAAGGTTCGTGTC CTTTGAGGAAGAAGACTTCGGCTCCTGAGTTACTGGGATTAGGCGGTATTTTGCCGGAAAAGGTGGCCGATAAGTGGGATAGTGTGGATAAAAGTCTTCG AGATTTGAGAAAAGTTATGTACACTCTCTGCAAACTGAGTGAAGATGCAGTCCAACAAGAAATCGAAGGAATGGTGATGGAGACTTGCGTTAGTGATCTC TGTGAAGTACAGACTTATAATCATGATTGTGCAAACTTGCTCGAAGGGAAGATTACAGAGCTGTCTAGTCTACGTGAAGAATTGGATGTGATTTCTCGTA TGTTGACAGTTCCCGAGAACGGAAAGCTTGTTTCTCACGCATCTTTGGACCATAAGAAGTTTCCGTCCAGTCATATTTCATTGACACATTCACTTTGGGA AGGAAATGGGCAACGAGCGGATTCAGAAGTTACTACGCCAGAAAAATCTGATCATTCACAGTTAAGGCACTTGACATGGGATGAATTAGCAAGCCATTAT AAGTCTGAGATGATGAAAATGAAGAGACAGCATGAGTCAGAAGTGCAAAAGATTACAGAAGAATATTTTGTCCTCAAAAGAGAGTACTTGAAAGAAAGAT CATCTTGTCTACCTTTGAAAAGGGATAATAAGGAGTTTGACGAACTGAGAAAGAAAATTTCGGAGGTTAGTTTGTTGTTGGATAGGATTATTTTGGAGAA TGAGAAACTGGCTCCACGGAGTAATGTTGGAGAGTCTCTTGACTCTTTAAACCACAGGTTGGAGATCCTTTCTCTAGAAAATCACCAACTAAGAGACACA CTAGCAGATAGAGAAGGGGAAATTAAGTTGCTCTTATCTCGGGTTTCTGATGCCACTGAAAAAATTTCAGAAGGCTCATTTACTGAAGCGAACTTGCTTA GGGCCATTGCAAATCTTATATCGGATAAAGAAGATGCACGCATGGAAGCTTTACTCAGTGATGACGTATATAAGTTCCTTATCAAGGAGGCGATTTTCCG GAATGAATGCACATTGGAAGAGCTAGCATTGGAGATTGATATTGGACAGGGGATCTATGAATGTATGTTCAATGAAGCAGGTAAAAACTATGAGCCCGTT TTGAAGTGTCAAGTTGAAGAAGCAGATTTGGTGTCCATTATTATGGAAGGATTATGTGAAGTCATCTATAGAGGAGCCTTCCAGGAAGCTGAGAGAGAGC TCTGTAAATTAAACCAGAAATATGTGAATGAAAATGAAGCTCGATCAGTGCTTGAGATCAAAGCATTGGAAAATGTTGCTGAGAAAGAAAACTTACAGAG ACAGATTGTTACACTGGAAACAATAATTGATAAGAAGGAGAAGGCTGCGCAAGAGATATTAGATGCACTGAGATCAGAGAAGGAAAAAAACATGTTAATT TCGCAAGAGGTTGATAGGTTGAAGGCACATACTAGTGAGCAGCAGTTATTAATTTCACAAAGCAGGTCAGAATCGGAAGTAATTAGTGATCAGCTGCTTG AAGCATTGGAGAACGTAGAAATGCACAGGAATGACAATTGCAAGCTGAGAAAGAAAATTGAGCTACTTACAGAGAAGTCCAAGGAAATTGCCGACGAAAA ACTCAAACTCATCACTGTTGCTGAAGAGAGGCTACATGCTGTGTCACAGTGTGAGGCCAGAGAAAGGGAATGGAAAAAACAAACCTTCTCAACAATTGCT CTTGTGAATGGTTTATCCAAATCTGTCAGTGATTTCCAGTGCAGAACGGAAGATATTACATCCAGAAATATGTCGAGGTTGGAAAATACGAATTCGCAAG TGAGTTGTCTTAATCAGAAGGCTGCCAGGCTGAAGAAAATGGTGTTTGTATACAAGGAGGCGTTGAAGAGGAAGAGCACTGACCTTGAAAAGGCTGAGTC TGAGGTTGATCTTCTGGGAGATGAGGTGGACACTCTACTAAGCCTTCTGGAAAAGATTTACATAGCGTTAGACCATTATTCTCCGATACTGCAACACTAT CCCGGAATAATCGAAATCCTGAAGCTGGTTAGAAGAGAATTGAGCGGCGAATCAAAAACAACCACCGAGGATAATGATGGTGGTCAGAAGTGGAAGAAAG CGACGGGAACAAAGGCAATAGCTTGA
AA sequence Show only first row Show all	>Lus10038540 pacid=23158236 polypeptide=Lus10038540 locus=Lus10038540.g ID=Lus10038540.BGIv1.0 annot-version=v1.0 MQHLDTLEENHHLDMIDDFELYMDDINNRLTIARMVNVSVMKGMVSAVEHDAAEQIAKKDFELAKLKEILHPRQLRLNDREASCGSTMSEELNSDRISEE CDSSQGCVQKLTLAASEQLKKLKVEIDKVKGSCPLRKKTSAPELLGLGGILPEKVADKWDSVDKSLRDLRKVMYTLCKLSEDAVQQEIEGMVMETCVSDL CEVQTYNHDCANLLEGKITELSSLREELDVISRMLTVPENGKLVSHASLDHKKFPSSHISLTHSLWEGNGQRADSEVTTPEKSDHSQLRHLTWDELASHY KSEMMKMKRQHESEVQKITEEYFVLKREYLKERSSCLPLKRDNKEFDELRKKISEVSLLLDRIILENEKLAPRSNVGESLDSLNHRLEILSLENHQLRDT LADREGEIKLLLSRVSDATEKISEGSFTEANLLRAIANLISDKEDARMEALLSDDVYKFLIKEAIFRNECTLEELALEIDIGQGIYECMFNEAGKNYEPV LKCQVEEADLVSIIMEGLCEVIYRGAFQEAERELCKLNQKYVNENEARSVLEIKALENVAEKENLQRQIVTLETIIDKKEKAAQEILDALRSEKEKNMLI SQEVDRLKAHTSEQQLLISQSRSESEVISDQLLEALENVEMHRNDNCKLRKKIELLTEKSKEIADEKLKLITVAEERLHAVSQCEAREREWKKQTFSTIA LVNGLSKSVSDFQCRTEDITSRNMSRLENTNSQVSCLNQKAARLKKMVFVYKEALKRKSTDLEKAESEVDLLGDEVDTLLSLLEKIYIALDHYSPILQHY PGIIEILKLVRRELSGESKTTTEDNDGGQKWKKATGTKAIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34730			myosin heavy chain-related (.1...		Lus10038540 [exp]	0	1
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007066 [exp]	4.5	0.8268
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	11.8	0.7553
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	12.0	0.7507
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	15.2	0.8087
					Lus10017380 [exp]	20.5	0.7294
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	21.7	0.8057
AT3G06440			Galactosyltransferase family p...		Lus10043102 [exp]	23.7	0.7702
					Lus10000650 [exp]	25.0	0.7939
AT2G43610			Chitinase family protein (.1)		Lus10003586 [exp]	26.2	0.7865
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	28.1	0.7802

Compare expression of checked genes

Lus10038540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.