Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30540 476 / 5e-169 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023262 [exp] 690 / 0 AT1G30540 495 / 9e-177 Actin-like ATPase superfamily protein (.1) Lus10033600 [exp] 472 / 3e-167 AT1G30540 491 / 3e-175 Actin-like ATPase superfamily protein (.1) Lus10017642 [exp] 471 / 6e-167 AT1G30540 489 / 2e-174 Actin-like ATPase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164500 [exp] 530 / 0 AT1G30540 523 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.001G466900 [exp] 525 / 0 AT1G30540 518 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.014G143500 [exp] 474 / 2e-168 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01869 [flax] [poplar] BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence Show only first row Show all	>Lus10038542 pacid=23158412 polypeptide=Lus10038542 locus=Lus10038542.g ID=Lus10038542.BGIv1.0 annot-version=v1.0 ATGGATGGTCAAACACATTGCAATGGAACCACACCATCGTCTCTAGATCATGCTCGCCTCGCTGGAGAAGGAGCAGCAGTAGGAGCAGCAGGAGTCTCGC ATTCTCCTTCCGAAAATGGTGGAACCGGATCCGCCGGAGTCGTACTTGGTGTTGACGGCGGCACCACCTCAACGGTATGCGTATGTATGCCGTTTCTGGA TTTGAGTGACAGCTCACCCGATCCCCTCCCCGTTCTGGCACGCGCCGTCGCCGGTTGCTCCAATCACAACAGCGTCGGAGAAACTGCTGCAAGAGAAACT TTGGAACATGTAATGACTGAAGCCCTTTTGAAATCTGGCTCGACAATGTCTGCTGTTCGTGCTGTTTGCTTAGGCGTGTCGGGTGTGAACCACCCGACTG ATCAAGAGAGGGTAGTAAATTGGCTCAGGGACATATTTCCTAGCCATGTGAAGTTATATGTATGTAATGATGCTGTTGCTGCATTAGCAAGTGGGACCAT GGGAAGACTTCATGGATGTGTCTTGATTGCCGGTACAGGATGCATCTCTTATGGTATCGCTGATGATGGCCGGGAAGCTCGGGCTTCAGGTGCAGGGCCC GTCTTGGGGGATTGGGGAAGTGGATATGGAATCGCAGCACGTGCGTTAACAGCAGTGATAAGGGCTCATGATGGACGTGGGCCACAGACAAAGCTTACAA ATAAAATACTGAAGACACTTGGCCTTTCTTCTCCTGATGAAATCATCGGGTGGACTTATGCGGATTCATCTTGGGCACGCATTGCAGCTCTAGTTCCAGA AGTAGTATCTTGTGCGGAAGATTCTGACGAAGTTGCGGATAAAATTCTAGTTAACGCGGTACAAGAATTGGCAACAAGTGTGAAGGCAGTTGCTGAACGG CTAAGTTTGTGTGGTGAAGACGGTAAAGGGCGTTTCCCTGTGGTAATGGTGGGTGGCGTCCTTGAAGCAAACAAGGGATGGGATATAGGAAACGAAGTGA TGAAATGCATTAGGCAACACTTCAGTGGTGCTTATGCAGTTAGACCGCAGGTGGAACCTGCAGTGGGAGCAGCTCTATTGGCTACGCATAACTTCATGAA AGAAACAAGTTTAAGAGCTGCAAGCAACTGTCGTAACTAA
AA sequence Show only first row Show all	>Lus10038542 pacid=23158412 polypeptide=Lus10038542 locus=Lus10038542.g ID=Lus10038542.BGIv1.0 annot-version=v1.0 MDGQTHCNGTTPSSLDHARLAGEGAAVGAAGVSHSPSENGGTGSAGVVLGVDGGTTSTVCVCMPFLDLSDSSPDPLPVLARAVAGCSNHNSVGETAARET LEHVMTEALLKSGSTMSAVRAVCLGVSGVNHPTDQERVVNWLRDIFPSHVKLYVCNDAVAALASGTMGRLHGCVLIAGTGCISYGIADDGREARASGAGP VLGDWGSGYGIAARALTAVIRAHDGRGPQTKLTNKILKTLGLSSPDEIIGWTYADSSWARIAALVPEVVSCAEDSDEVADKILVNAVQELATSVKAVAER LSLCGEDGKGRFPVVMVGGVLEANKGWDIGNEVMKCIRQHFSGAYAVRPQVEPAVGAALLATHNFMKETSLRAASNCRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30540			Actin-like ATPase superfamily ...		Lus10038542 [exp]	0	1
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	3.0	0.8789
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	4.9	0.8676
AT2G38480			Uncharacterised protein family...		Lus10001266 [exp]	6.5	0.8810
AT2G46550			unknown protein		Lus10005973 [exp]	8.8	0.8571
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	10.0	0.8751
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	12.6	0.8341
AT3G14830			unknown protein		Lus10041938 [exp]	12.9	0.8812
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	16.4	0.8755
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	21.1	0.8328
AT3G54440			glycoside hydrolase family 2 p...		Lus10039519 [exp]	22.6	0.8541

Compare expression of checked genes

Lus10038542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.