Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30580 714 / 0 GTP binding (.1) AT1G56050 285 / 1e-92 GTP-binding protein-related (.1) AT1G07615 68 / 3e-12 GTP-binding protein Obg/CgtA (.1) AT5G18570 66 / 2e-11 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G17470 50 / 1e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 49 / 3e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G39520 48 / 6e-06 GTP-binding protein-related (.1) AT5G57960 42 / 0.0005 GTP-binding protein, HflX (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023261 [exp] 809 / 0 AT1G30580 711 / 0.0 GTP binding (.1) Lus10031209 [exp] 248 / 7e-79 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10031789 [exp] 240 / 9e-76 AT1G56050 626 / 0.0 GTP-binding protein-related (.1) Lus10024297 [exp] 85 / 1e-17 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 68 / 4e-12 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 68 / 5e-12 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 59 / 3e-09 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 57 / 7e-09 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10015662 [exp] 49 / 4e-06 AT1G72660 760 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164000 [exp] 751 / 0 AT1G30580 691 / 0.0 GTP binding (.1) Potri.001G465900 [exp] 748 / 0 AT1G30580 681 / 0.0 GTP binding (.1) Potri.001G457900 [exp] 279 / 2e-90 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.011G143700 [exp] 125 / 2e-33 AT1G56050 357 / 1e-122 GTP-binding protein-related (.1) Potri.002G029600 [exp] 87 / 2e-18 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 65 / 3e-11 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 62 / 3e-10 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.003G063500 [exp] 50 / 2e-06 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 49 / 3e-06 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 49 / 4e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF06071 [flax] [poplar] YchF-GTPase_C Protein of unknown function (DUF933) CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10038543 pacid=23158156 polypeptide=Lus10038543 locus=Lus10038543.g ID=Lus10038543.BGIv1.0 annot-version=v1.0 ATGCCTCCCAAATCCGCTAAATCGAAGGAAGCTCCGGTGGAGCGCGCGATCCTCGGCCGATTCTCGTCTCATCTGAAGATTGGCATAGTTGGATTGCCAA ATGTGGGGAAATCGACCCTTTTCAACACGCTGACCAAGTTGTCCATACCGGCCGAGAACTTCCCTTTCTGCACCATTGAGCCCAACGAGGCTCGCATCAA TGTTCCCGACGAGAGGTTTGATTGGCTATGTCAGTTGTTCAAGCCCAAGAGCGAGGTTTCTGCATTCCTCGAAATCCATGATATAGCTGGACTGGTTAGA GGCGCTCATCAAGGACAGGGGTTGGGCAACAATTTCTTGTCACATATCCGTGCCGTTGATGGAATCTTCCATGTCTTACGTGCGTTTGAGGATTCGGATA TTATCCATGTTGATGACTTGGTGGATCCTGTCAGAGATTTAGAAACTATAGGTGCAGAGTTGCGGCTAAAGGATATTGAATTCATGGAGAGGAGGATTGA GGATATCGAAAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAGATAGAGCTCGAACTATGCCAACGGGTCAAGAAATGGCTTGAGGATGAAAAAGAT GTGCGCCTTGGTGAATGGAAAGCTGCTGATGTTGAGATAATGAATACATTTCAGTTGCTCACTGCCAAGCCTGTTGTTTACTTGGTAAACATGAATGAGA AAGACTACCAGAGGAAAAAGAACAAGTTCTTGCCGAAGATTCATGCTTGGGTGCAGGAGCATGGGGGTGAACCAATTATTCCTTTCAGCTGTGCGTTAGA GAGGAATCTGGCTGATATGCCACCAGATGAAGCAGCTAGGTATTGTGAGGAGAACAAGGTACAAAGTGCTCTTACAAAGATCGTAAAGACCGGCTTTTCT GCCATCAATCTCATATACTTCTTCACTGCCGGACCTGACGAGGTGAAATGTTGGCAAATCAGGCGACTAACAAAGGCCCCCCAAGCAGCAGGCGCGATCC ATACCGATTTTGAGAAAGGGTTTATATGTGCTGAGGTCATGAAATTTGAGGATCTGAAGGAACACGGGACCGAGTCTGCTGTTAAGGCTGCTGGCAAGTA CAAACAAGAGGGGAAAACATACATTGTCCAAGACGGAGACATCATATTCTTCAAGTTCAATGTTTCCGGAGGTGGAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10038543 pacid=23158156 polypeptide=Lus10038543 locus=Lus10038543.g ID=Lus10038543.BGIv1.0 annot-version=v1.0 MPPKSAKSKEAPVERAILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARINVPDERFDWLCQLFKPKSEVSAFLEIHDIAGLVR GAHQGQGLGNNFLSHIRAVDGIFHVLRAFEDSDIIHVDDLVDPVRDLETIGAELRLKDIEFMERRIEDIEKSMKRSNDKQLKIELELCQRVKKWLEDEKD VRLGEWKAADVEIMNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEPIIPFSCALERNLADMPPDEAARYCEENKVQSALTKIVKTGFS AINLIYFFTAGPDEVKCWQIRRLTKAPQAAGAIHTDFEKGFICAEVMKFEDLKEHGTESAVKAAGKYKQEGKTYIVQDGDIIFFKFNVSGGGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	4.9	0.9251
AT3G25545			unknown protein		Lus10013064 [exp]	5.2	0.9049
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	5.3	0.9048
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	9.5	0.9054
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	17.7	0.8911
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	19.6	0.8961
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	20.2	0.8961
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	21.4	0.8957
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031756 [exp]	21.5	0.8552
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	23.6	0.8686

Compare expression of checked genes

Lus10038543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.