Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20940 899 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G10020 386 / 2e-117 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G27060 325 / 8e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 241 / 2e-65 Leucine-rich repeat protein kinase family protein (.1) AT3G56100 207 / 5e-56 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G51740 201 / 3e-53 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT1G55610 197 / 2e-51 BRL1 BRI1 like (.1.2) AT2G26730 188 / 7e-50 Leucine-rich repeat protein kinase family protein (.1) AT3G56370 186 / 4e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G08590 184 / 2e-47 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023260 [exp] 883 / 0 AT4G20940 704 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10026756 [exp] 349 / 7e-104 AT2G27060 961 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025541 [exp] 348 / 2e-103 AT2G27060 958 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022679 [exp] 259 / 2e-73 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 206 / 2e-56 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 206 / 2e-55 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 202 / 7e-54 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 198 / 2e-52 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10017756 [exp] 184 / 2e-48 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163700 [exp] 1398 / 0 AT4G20940 946 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G465800 [exp] 1397 / 0 AT4G20940 915 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G197500 [exp] 657 / 0 AT2G27060 1053 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G083000 [exp] 635 / 0 AT5G10020 1140 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G082800 [exp] 374 / 1e-112 AT5G10020 1132 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.016G126300 [exp] 273 / 7e-78 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.009G159101 [exp] 209 / 6e-62 AT2G27060 214 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 219 / 5e-59 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 218 / 7e-59 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 191 / 8e-51 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038544 pacid=23158424 polypeptide=Lus10038544 locus=Lus10038544.g ID=Lus10038544.BGIv1.0 annot-version=v1.0 ATGAAGCTTTTGAGGTATTTAGTGCTATTCTTGCTTTTCCTGTCTTCCATGGCTCAGCTTCCTTCCCAGGATATCTTGGCATTGCTCGAGTTCAAGAAGG GCATTAAGCATGACCCTACTGGGTATGTTCTCCAGTCATGGAATGAGGAGTCCATAGACTTCAATGGCTGCCCTTCTTCCTGGAATGGCATCGTCTGCAA TGGAGGTAATGTAGCTGGAGTTGTTCTTGACAACTTAGACCTCTCAGCTGATGTAGACTTGACTGTGTTCGCCAATCTCACATTGCTTGTCAAACTATCC ATGGCCAACAACTCCATAACCGGCCAAATCCCTGACAACATTGGAGACTTCAAAGCCCTGCAGTTCTTGGATCTTTCCAACAATCTGTTCAACTCATCTT TGCCCTCAGGGATTGGCAGATTGGGCAGCTTGAGGAACCTATCTCTTGCTGGAAACAACTTCTCTGGTCCAGTTCCTGATTCCATTTCTGGACTTGCATC TCTCCAGTCATTGGATTTGAGTAAGAACTCCCTTTCAGGGTCAATACCAGGATCATTAACCAGAATGGATAGCCTGGTTTATCTAGACTTGTCTTCAAAC CGGTTCGGGAAGAAGATTCCCAGAGGATTCGAGCTGATTTCGGGTTTGCAAGTGCTTGATTTGCATGGCAATATGCTTGATGGTCATCTTGATGGGGAGT TCTTCCTTTTAACAAATGCTAGCCATGTGGATTTCAGTGGGAATATGTTAGGGAGCTCTGGTTCTGGGAAATTGCTTCCAGGTATATCTGATAGTGTAAA GTACTTAAATATAAGCCGGAATCAGTTGGCTGGATCGTTGTTAAGTGGTGGTGAGCTGCGCTTGTTCTCAAGCTTGAAAGTGTTGGATTTAAGCTACAAT CAGCTCTACGGAGAGTTGCCTGGATTCGATTATGCGTACGATCTTCAGGTCCTTAAACTTAGCAACAATATGTTCTCGGGATTCGTTCCTAATGACCTGT TGAAAGGAGATTCGCTGCTTTTAAGTGAGCTAGATTTGAGTGGGAACAATCTATCAGGACCGATAACTGCGATTATGTCGACAACTCTGCACATACTTAA TCTTTCATCGAACGGTCTCAAGGGGGAACTACCTCTGTTGACTGGAGGATGTGCTGTCCTTGATCTATCTGGCAACCAGTTTGAAGGGAATCTTTCCAGA ATCTTGAAGTGGGGTGATGTTGAGTATCTTGATCTCAGCCGGAATCGTTTGATAGGTCCACTTCCTGAAGCATCCTCTCAACTTATGCGGTTAAACCATC TCAACCTCTCATATAATTCTCTTACCGGCTCTCTTCCAAGATCCATCACACAGTACTCCAAAATGACAGTGCTTGATCTTAGTTCCAATCAGTTCGAAGG AAATTTACTCTCTGATCTATTAACTTCAACGACATTGCAGCAACTTCGCCTCGGCCATAACTCATTGACCGGTGATATTGAGTTCGCTGCTCCACCCAAC AGCAAATCAGACCTTGAAATTCTCGATCTTTCTCACAATCGGTTTGATGGCTATTTCCCTGATCAGTTTGGGTCGCTTGCTGGACTAAAAGAGCTCAATC TTGCAGGGAACAACATTTCTGGCTCTCTGCCAGCTTCCATGGACGGCATGAGTTCACTAACCTTGCTTGATCTGTCGCAGAATCGTTTCACAGGTCCTTT ACCGAGCAATTTGTCAAACAGCCTTGAAAGCTTTAATGTTTCAAGCAATGATCTTTCAGGTGTTGTCCCAGAAAACTTGAGGACATTTCCTACTTCTTCA TTCTACCCGGGGAATGCTGAGTTGATTCTTCCTGGTGGAAATTCGAGCAATGCTCCTGCTGGAAATTTGAGAAGGAATAAGCCAATCAACACTGCTGTGA AGATAGTAGTGATTGTTTCCTGTGTGATTGCAGTACTCATTCTGATCTTGCTTGCTATCTTCATACATTATCTCCGCTTATCGAGCAGATCTCCCTCGGA ACAAGTTGCGAGCAAAGCCACCATGATCACTAGTCGCCCCATGAGCAAGGTATCCAGTGGAGGTGGTGCATTGGTAGTTTCTGCTGAGGATCTCGTAGCA GCTCGAAAGGGGTCATCGTCCGAGATCCTTAGCCCCGACGAGAAACTAGCTTCAGTAACCGGTGGAGGATTCTCCTCCCCTTCGAAGCAAAGCCGATACT CATGGTCCCCCGAGTCCGGTGGGGAATCATTGCCTACGGAATCTTTGGCAAGACTCGATGTGAGGTCACCGGACCGGTTAGTTGGGGAGCTGCATTTCCT TGATGATGCCATAACTCTGACCCCTGAGGAATTGTCAAGAGCTCCAGCTGAAGTGTTGGGGAGGAGCAGCCATGGGACTTCCTACAGAGCAACACTTGAC AGTGGTGTGTTCTTGACGGTGAAATGGTTGAGAGAAGGTGTGGCGAAACCGAAGAAGGATTTTGCTAAAGAGGCTCGGAAGTTCACCAACATCAGGCACC CTAATGTGGTTGGATTGAGAGGGTATTACTGGGGGCCAACTCAACATGAGAAGCTCATTCTTTCAGACTACATCTCGCCTGGAAGTCTCGCCAGCTTTTT ATTTGACAAACCAGGAAGAAGAGGGCCACCACTAACATGGCCACAGAGACTCAAAGTAGCAGTGGACGTCGCACGTAGCCTAAACTATCTCCATTTCGAC CGCGCGGTCCCACACGGTAACCTCAAGGCCACAAACATACTCCTCGACGGCCCCGAACTGAATGCACGAGTCTCCGACTACTGCCTGCACCGACTGATGA CACAGGCCGGCACTGTGGTCCAAATCCTGGACGCTGGAGTGCTAGGATACCGAGCACCGGAGCTAGCTACCTCTAAGAAACCGGCGCCTTCCTTCAAGTC GGATGTGTATGCATTTGGAGTCATCCTGTTGGAGATACTAACGGGAAGGTGCGCTGGCGATGTGATCACAGGGGAAGAAGGTGCGGTGGACTTGGCGGAC TGGATTAAGCTGAGGGTGGCGGAAGGTCGTGGTACCGAATGCATCGATGCAGCGATGGTGCAGGAGGTGGGGAATCCGGGAGTTGAGAAAGGGATGAAGG AAGTGCTTGGGATTGCTTTGAGGTGTATAAGGTCTGTGAATGAAAGGCCAGGTATCAAGACCATATATGAAGATCTTTCTTCTGTTTAG
AA sequence Show only first row Show all	>Lus10038544 pacid=23158424 polypeptide=Lus10038544 locus=Lus10038544.g ID=Lus10038544.BGIv1.0 annot-version=v1.0 MKLLRYLVLFLLFLSSMAQLPSQDILALLEFKKGIKHDPTGYVLQSWNEESIDFNGCPSSWNGIVCNGGNVAGVVLDNLDLSADVDLTVFANLTLLVKLS MANNSITGQIPDNIGDFKALQFLDLSNNLFNSSLPSGIGRLGSLRNLSLAGNNFSGPVPDSISGLASLQSLDLSKNSLSGSIPGSLTRMDSLVYLDLSSN RFGKKIPRGFELISGLQVLDLHGNMLDGHLDGEFFLLTNASHVDFSGNMLGSSGSGKLLPGISDSVKYLNISRNQLAGSLLSGGELRLFSSLKVLDLSYN QLYGELPGFDYAYDLQVLKLSNNMFSGFVPNDLLKGDSLLLSELDLSGNNLSGPITAIMSTTLHILNLSSNGLKGELPLLTGGCAVLDLSGNQFEGNLSR ILKWGDVEYLDLSRNRLIGPLPEASSQLMRLNHLNLSYNSLTGSLPRSITQYSKMTVLDLSSNQFEGNLLSDLLTSTTLQQLRLGHNSLTGDIEFAAPPN SKSDLEILDLSHNRFDGYFPDQFGSLAGLKELNLAGNNISGSLPASMDGMSSLTLLDLSQNRFTGPLPSNLSNSLESFNVSSNDLSGVVPENLRTFPTSS FYPGNAELILPGGNSSNAPAGNLRRNKPINTAVKIVVIVSCVIAVLILILLAIFIHYLRLSSRSPSEQVASKATMITSRPMSKVSSGGGALVVSAEDLVA ARKGSSSEILSPDEKLASVTGGGFSSPSKQSRYSWSPESGGESLPTESLARLDVRSPDRLVGELHFLDDAITLTPEELSRAPAEVLGRSSHGTSYRATLD SGVFLTVKWLREGVAKPKKDFAKEARKFTNIRHPNVVGLRGYYWGPTQHEKLILSDYISPGSLASFLFDKPGRRGPPLTWPQRLKVAVDVARSLNYLHFD RAVPHGNLKATNILLDGPELNARVSDYCLHRLMTQAGTVVQILDAGVLGYRAPELATSKKPAPSFKSDVYAFGVILLEILTGRCAGDVITGEEGAVDLAD WIKLRVAEGRGTECIDAAMVQEVGNPGVEKGMKEVLGIALRCIRSVNERPGIKTIYEDLSSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	0	1
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	1.7	0.9614
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	2.8	0.9549
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	4.6	0.9468
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	6.5	0.9226
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	7.3	0.9246
AT5G19340			unknown protein		Lus10041215 [exp]	7.7	0.9367
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10029071 [exp]	8.7	0.9122
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	10.4	0.9125
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	10.7	0.9244
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	11.8	0.9362

Compare expression of checked genes

Lus10038544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.