Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20930 451 / 4e-160 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 101 / 4e-24 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G29120 93 / 3e-21 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 79 / 2e-16 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G18270 79 / 7e-16 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT1G71170 77 / 8e-16 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 73 / 2e-14 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023258 [exp] 584 / 0 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10015612 [exp] 99 / 1e-22 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10037629 [exp] 95 / 5e-22 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10016077 [exp] 87 / 2e-18 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10001349 [exp] 82 / 1e-17 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 83 / 3e-17 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10012950 [exp] 77 / 9e-16 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10015455 [exp] 63 / 8e-11 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10012301 [exp] 62 / 1e-10 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465600 [exp] 478 / 7e-171 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 94 / 2e-21 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 88 / 7e-20 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 81 / 3e-17 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 81 / 6e-17 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 74 / 3e-14 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G038450 [exp] 53 / 2e-08 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038545 pacid=23158324 polypeptide=Lus10038545 locus=Lus10038545.g ID=Lus10038545.BGIv1.0 annot-version=v1.0 ATGGGGTTCCGAATGGCCAATAACTTGATCAGAGCTGGCTACAACCTAGCTGTTCACGACATATTTGGTAGTGATTTCGAATTTTCGTATTTTGAATTCG ACCATCCAAACACAGCCTTATTGGTTTGTGCCTGGGTTTCTTTCGATTTCAGTAACCATGGTGTGATGAAGATGTTTTCTGACATGGGCATTCCTGCTGA AGGCACTCCATCTGATGTTGCTGAATCAAGTGACGTTGTGATCACAATGTTGCCTTCATCCTCTCATGTAGTGGACGTGTACACTGGACCAAACGGATTG CTTCGCGATGGAAGCGCACTGAGACCTAAGTTGTTTATTGATTCATCTACTATTGATCCCCAAACGTCAAGAAAGGTTTCGGCTGCTGTGTCCGAGTGTA CTTTGAAGGAAGATAGAGGAAACGATTGGAAGAAACCTGTTATGTTGGATGCTCCGGTTTCTGGAGGTGTTATTGCTGCAGAAGCTGGTGTACTTTGTTT TATGGTGGGTGGTTCCCAGGAAGCCTATCTGGCTGCCAAACCCATATTTCACTCGATGGGCAAAAACACAATCTACTGCGGAGGAGCAGGAACTGGTTCA TCAGCAAAGCTATGCAACAATTTGGCAATGGCTGTTAGTATGCTTGGTGTATCGGAAGCCCTTGCTCTCGGTCAGTCGCTTGGAATCGATGCAAGCACTC TCACCAAGGTTTTCAACTCTTCAAGCGCTCGATGTTGGAGTAGTGATACCTATAACCCAGTTCCAGGAGTGATGGAAGGGGTACCTTCTTCGAGAAACTA TGCTGGAGGATTTGCCTCCAAGCTCATGGCGAAAGACTTGAACCTAGCTGCTGCATCGGCCAAAGCTGTCGATCTGAAATGCCCTCTGACATCCCAAGCT CGAGAGATATACGAAAGACTTTGCGCAGATGGCCACGAGAACGAGGACTTCTCATGCGTTTTTCGCCACTTCTACTCTGGACAAGATGAGCATTAG
AA sequence Show only first row Show all	>Lus10038545 pacid=23158324 polypeptide=Lus10038545 locus=Lus10038545.g ID=Lus10038545.BGIv1.0 annot-version=v1.0 MGFRMANNLIRAGYNLAVHDIFGSDFEFSYFEFDHPNTALLVCAWVSFDFSNHGVMKMFSDMGIPAEGTPSDVAESSDVVITMLPSSSHVVDVYTGPNGL LRDGSALRPKLFIDSSTIDPQTSRKVSAAVSECTLKEDRGNDWKKPVMLDAPVSGGVIAAEAGVLCFMVGGSQEAYLAAKPIFHSMGKNTIYCGGAGTGS SAKLCNNLAMAVSMLGVSEALALGQSLGIDASTLTKVFNSSSARCWSSDTYNPVPGVMEGVPSSRNYAGGFASKLMAKDLNLAAASAKAVDLKCPLTSQA REIYERLCADGHENEDFSCVFRHFYSGQDEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	2.6	0.8930
AT5G59210			myosin heavy chain-related (.1...		Lus10040740 [exp]	7.4	0.8556
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	7.9	0.8622
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	8.8	0.8786
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	9.8	0.8078
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10001916 [exp]	13.4	0.8738
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	15.5	0.8517
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	17.3	0.8334
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	18.0	0.8700
AT5G64180			unknown protein		Lus10008120 [exp]	19.0	0.8415

Compare expression of checked genes

Lus10038545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.