Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20910 712 / 0 CRM2, HEN1 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) AT4G20920 476 / 1e-155 double-stranded RNA-binding domain (DsRBD)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023257 [exp] 1670 / 0 AT4G20910 818 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Lus10006035 [exp] 100 / 3e-23 AT1G76480 147 / 1e-43 unknown protein Lus10000530 [exp] 100 / 6e-20 AT5G22450 71 / 3e-14 unknown protein Lus10008393 [exp] 76 / 5e-15 AT3G52280 139 / 3e-39 general transcription factor group E6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465500 [exp] 1046 / 0 AT4G20910 857 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2) Potri.011G163600 [exp] 1022 / 0 AT4G20910 776 / 0.0 HUA ENHANCER 1, CORYMBOSA 2, double-stranded RNA binding protein-related / DsRBD protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10038546 pacid=23158250 polypeptide=Lus10038546 locus=Lus10038546.g ID=Lus10038546.BGIv1.0 annot-version=v1.0 ATGGAAGCGCAAGGATCAGTAACTGTCACGGCAAGGAAGACGAATCTTACACCGAAGGCCATCATCCATCAGAAGTTCGGCCGCAAGGCGTGTTATACGG TGGAGGAAGTTCAAGAGTCCGCTCAGACTGAATGCCCTGGGTTGTCGACCCCTCAGAAGGGTCCGTCTCTTTATCGATGCAGATTAGAGCTCCCTGAAAT TTCTGTTGTGTCCGATACTTGCAAAAAGAAGAAGGATGCCGAACAGTCTGCTGCTGAGATGGCTTTGAAGAAGCTAGGCATCGATGCTACAGCTGATGAT CCAACTGCCTTGGATTTATGGGATATCTTAGTTGAAAGGATCAAGTACTTGTTTTCAGATGAGTTCCTTTCGTCTTTGCATCCATTGTCTGGTCACCTTA AAGGAGCTTTCTGCAGAGATGGTGATCTATGTGGTTCAGTGCCCTGTTCAGTTTTTGCTGTCTCTGATACAAAGTTGAGCAATTTATGTAAATCTCTGGA CCCCAATGTGGATTTGAATCCTTTCCTGGCCCTTCCAATCATTAGAATTGCTGCAGCAAGATTACCCTCTGTTGTGGTTTCAGAGAAAAGGTATTCAATT CAGAGACTGAGGCCATACTCTCCTGAGATATTGAAATCTTCTACCATCCAGCATCCTCATTCTGCTGAAGCTATATTGGTTGATGCTATATATATACCGT CTTCGTTGGATAAGAACGTTCGACCGGTGACTCTTGATTTGTCTTCAGCTGGTTATTACATGGATGTTATTGCACAGAATCTTGGTGTTCATGATGCTGG TAGAGTTCTATTGTCCAGGACAGTTGGTAAAGCTTCTTCAGAGACGAGATTATATCACGCTGCCCCTGAATCACTTCTGGTCGAGCTGTTGCCAGATCGT GTACCTGTAAAAGATGTCCACCTAGAAGGATCATATAATGCAAGAGCTAGCTACTTTTGTGGCCAACTCATACATGGGGATGCTATCATGGCTTCCATTG GGTACACGTGGAGGTCCAGAGACCTTTTTCATGAGAATTTAACCTTGCAAACGTATCACAGGATACTACTTAGCACATTTCCAAGTGGAACTTACAAATT GTCAAGAGAAGCAGTACTTGCAGCTGAATTGGCTTCACGGTTTACAACAAAAGCTTATTGGAGAGGTACCTTCCCAAAAGAAGTTCTCTGTACATTCTGC CGGCTGCACCGACTGTCTGAACCTGTATTCTCTATTATAAGCAAGCCTTCGGCAGAATCTGGTTTATCGAGATTGCACAAAAAGGTGAAACTCAAAGAGA CAACCATACCGCCAATTGGGAGTTCGAATGAGATACCTGCTGCTACTGGAGATACAGACTCAGCTGATTCTGGTAGCACTTTTAGATGTGAAATAAAGAT ATACTCCAAGCTTCGGGATTTGCTCGTGGAATGCTCGCCCAGTCAGATATATAAGAAGCAGAGTGATTCTGTTCACAATGCTTCTTTGAAGGTTCTGTCA TGGTTGAGTACGTATTTTAACAACGTAGGCATGCCCTTAGAAAGGCTTAACTCATATGCAGAAAACCTTGCTATCAAGTTTGATCCTGAAACATTCTGCA AAGAGTTTGTTCTTTATCCATATATCGAGAATAATGTTACAAGGAATAGAGAACAAAAGCTACTAGAAGAAAAAGCTGCAGATCTTTCATGTTCTTTGTC TGAACATGGCGTGATGTCCTTAATGGTAGAAGGTTGTGATTCTGGCGCCTGTCCAGCTAATGGATCCCTGTTATGTATAACCTATTCTGTTTTTCTAGCA ATCAAAGGCGAAGAAACCAAAGAGCTTCTCGAAAGAAAGGATGAGTTTGAGTTCGAGATAGGTACTGGAGCAGTCGTTTCTCCTCTAGAGGCTGTTGTGA CACAGATGTCAGTTGGTCAGTCTGCTCTCTTCCATACGATGTTACCCCCTGAATATTCTATATTAGCTGCCGGAAATGATTCCGGAAGATTACTGTTCTT GATATCTTCATCCGGTAATTGCTACTTGCAATTTTCTGTGACATTGTTGCATGTAACTGAACCTCCAGAAGAAAGAATGGAGCAGGCTCTGTTCAGTCCT CCACTTTCAAAACAAAGGGTGGAATTTGCCGTCCAGCATATCAGAAATTCTTCTGCTTTATCCCTAGTTGACTTTGGGTGTGGATCCGGAAGCTTGTTGG ATTCTCTATTGGATTATCCAATCTCTCTGGAAACGATTGTTGGTGTCGACATATCTGTGAAAGGTCTAACTCGTGCTGCAAAGATACTAAATTCGAAGCT CGCTGCAAAGACCGACATTGCTGTCAAATCTGCAATTCTATACGACGGTTCCATCACTGTTTATGATTCTCGGCTGCATGGAGTTGATATCGGCACTTGC TTGGAGGTGATTGAGCATATGGAGGAAGAGGAAGCGACCCAGTTCGGAGACGTGGTACTGAGCCATTTCCGTCCGAGGATCCTCGTCGTCTCCACCCCGA ACTATGAATACAACGTGATCCTTCAAAATTCCGGAAGCCAAGACGAAGACCCTGATGAGAAATCCCTGACGCAGTCCATCAAGTTCCGGAACCTGGACCA CAAGTTCGAGTGGACTAGGCAGCAGTTCGGAGAATGGGCGTGCCGGTTGGGGGAGAAACACAGCTACCACGTTGAGTTTGGTGGCGTTGGTGGCACTGCC GGTGTCGAACCGGGGTTTGCTTCTCAGATTGCTGTTTTCAAGACGAAGCTTGTTGAGGAAGGGACTTGTGGAGATGATGGCATTTTCGAAACCGAGACGG AGTGTTTGGAAGAACCGTACAATGTTATATGGGAGTGGAAGAGTTCAGTGCAGTAG
AA sequence Show only first row Show all	>Lus10038546 pacid=23158250 polypeptide=Lus10038546 locus=Lus10038546.g ID=Lus10038546.BGIv1.0 annot-version=v1.0 MEAQGSVTVTARKTNLTPKAIIHQKFGRKACYTVEEVQESAQTECPGLSTPQKGPSLYRCRLELPEISVVSDTCKKKKDAEQSAAEMALKKLGIDATADD PTALDLWDILVERIKYLFSDEFLSSLHPLSGHLKGAFCRDGDLCGSVPCSVFAVSDTKLSNLCKSLDPNVDLNPFLALPIIRIAAARLPSVVVSEKRYSI QRLRPYSPEILKSSTIQHPHSAEAILVDAIYIPSSLDKNVRPVTLDLSSAGYYMDVIAQNLGVHDAGRVLLSRTVGKASSETRLYHAAPESLLVELLPDR VPVKDVHLEGSYNARASYFCGQLIHGDAIMASIGYTWRSRDLFHENLTLQTYHRILLSTFPSGTYKLSREAVLAAELASRFTTKAYWRGTFPKEVLCTFC RLHRLSEPVFSIISKPSAESGLSRLHKKVKLKETTIPPIGSSNEIPAATGDTDSADSGSTFRCEIKIYSKLRDLLVECSPSQIYKKQSDSVHNASLKVLS WLSTYFNNVGMPLERLNSYAENLAIKFDPETFCKEFVLYPYIENNVTRNREQKLLEEKAADLSCSLSEHGVMSLMVEGCDSGACPANGSLLCITYSVFLA IKGEETKELLERKDEFEFEIGTGAVVSPLEAVVTQMSVGQSALFHTMLPPEYSILAAGNDSGRLLFLISSSGNCYLQFSVTLLHVTEPPEERMEQALFSP PLSKQRVEFAVQHIRNSSALSLVDFGCGSGSLLDSLLDYPISLETIVGVDISVKGLTRAAKILNSKLAAKTDIAVKSAILYDGSITVYDSRLHGVDIGTC LEVIEHMEEEEATQFGDVVLSHFRPRILVVSTPNYEYNVILQNSGSQDEDPDEKSLTQSIKFRNLDHKFEWTRQQFGEWACRLGEKHSYHVEFGGVGGTA GVEPGFASQIAVFKTKLVEEGTCGDDGIFETETECLEEPYNVIWEWKSSVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Lus10038546 [exp]	0	1
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	3.9	0.8382
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10004693 [exp]	5.0	0.7892
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	6.9	0.8169
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	10.8	0.7974
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	16.2	0.8011
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	24.8	0.7543
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	25.3	0.7580
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	26.0	0.7866
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	35.3	0.7182
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	39.1	0.7739

Compare expression of checked genes

Lus10038546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.