Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32120 363 / 3e-117 unknown protein AT1G55240 126 / 2e-34 Family of unknown function (DUF716) (.1) AT1G55230 121 / 1e-32 Family of unknown function (DUF716) (.1) AT1G49470 106 / 7e-27 Family of unknown function (DUF716) (.1) AT5G19870 97 / 8e-24 Family of unknown function (DUF716) (.1) AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) AT3G01360 42 / 0.0002 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014806 [exp] 449 / 1e-161 AT1G32120 424 / 1e-140 unknown protein Lus10039191 [exp] 108 / 9e-28 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 106 / 6e-27 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1) Lus10023842 [exp] 97 / 3e-23 AT1G49470 275 / 6e-92 Family of unknown function (DUF716) (.1) Lus10021008 [exp] 86 / 1e-19 AT1G49470 257 / 2e-85 Family of unknown function (DUF716) (.1) Lus10011779 [exp] 44 / 4e-05 AT1G32120 69 / 9e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100700 [exp] 379 / 8e-134 AT1G32120 382 / 2e-124 unknown protein Potri.001G132800 [exp] 359 / 7e-126 AT1G32120 377 / 2e-122 unknown protein Potri.003G216500 [exp] 133 / 5e-37 AT1G55230 383 / 3e-134 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 125 / 9e-34 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 120 / 3e-32 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.009G108900 [exp] 114 / 8e-30 AT1G49470 308 / 5e-105 Family of unknown function (DUF716) (.1) Potri.001G008900 [exp] 100 / 1e-24 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.005G122800 [exp] 47 / 6e-06 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.002G237200 [exp] 45 / 3e-05 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10038547 pacid=23143159 polypeptide=Lus10038547 locus=Lus10038547.g ID=Lus10038547.BGIv1.0 annot-version=v1.0 ATGGGTTCATTCAAAGGTCATGTTGTACCTGGATCATTGTTTTTGATCATTGGTGTGTGGCACATATGGTGTTCCTTGGTTCGCTATGTCTCCAATCCAA AGTGTTTCCGTGTACGTGTTTGGAATCCCGTCCCGGGTTTTGAAGGGAAGTTGAAGTACATGGAGATCTACGTTATCGTTATTGGAGCCTTTATAGACCT ATGTATTGAGCTTTTGTACTCAACACACCTCAGGTTTTTCGTTAATGGAGTGCTGAATCCTAGTCACATGAACAATTTTGAACACTCAGGAATGTTATTG ATGTTCTTTATCCTTGGTGTTATCACCTTGCTATCCGAGACAACAAGATTTCTACCTTTGCCAGAAGGAGCTCTTAGTTTGGTAGCTGCCGCAGCATTCT GTGCAGAGTACTTGTTGTTTTACTTCCATTCAACAACACATAAGGGCCTCGAAGGTTTTTACCATCTCATTCTGGTCCTCCTGATAGGACTCTGTTTAGT GTCTGCTGTTGCTGGAGCAATCCTCCCGACAAGCTTTCCAGTTGACTTGTCTAATGGCATTGCCATGACTCTTCAAGGCCTCTGGTTCTATCAGACAGCC TTCAGCCTCTATGGCCCAATGATGCCAAATGGTTGTAGCCTCAAAGAAGATCAAATTGTATGCGAGTCTGGAGTCAGCCGGGTTCGAGGCGAGTTGCTGG CTAACTTTCAGCTCTTCTTTTTGGTCCTCGGGGTACTTGTTGCGGTTGTGGTATCATATGGTTTTGCAGCTTCAAGATATGGGAACCGTTTGCTGATTAC AAACTCAAGATAA
AA sequence Show only first row Show all	>Lus10038547 pacid=23143159 polypeptide=Lus10038547 locus=Lus10038547.g ID=Lus10038547.BGIv1.0 annot-version=v1.0 MGSFKGHVVPGSLFLIIGVWHIWCSLVRYVSNPKCFRVRVWNPVPGFEGKLKYMEIYVIVIGAFIDLCIELLYSTHLRFFVNGVLNPSHMNNFEHSGMLL MFFILGVITLLSETTRFLPLPEGALSLVAAAAFCAEYLLFYFHSTTHKGLEGFYHLILVLLIGLCLVSAVAGAILPTSFPVDLSNGIAMTLQGLWFYQTA FSLYGPMMPNGCSLKEDQIVCESGVSRVRGELLANFQLFFLVLGVLVAVVVSYGFAASRYGNRLLITNSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32120			unknown protein		Lus10038547 [exp]	0	1
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	27.6	0.8246
AT3G56210			ARM repeat superfamily protein...		Lus10010218 [exp]	30.5	0.8220
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	32.5	0.8221
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	35.4	0.8221
					Lus10014817 [exp]	42.3	0.8214
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	43.4	0.7949
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	46.5	0.8073
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10015782 [exp]	48.8	0.8214
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	52.5	0.8136
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10009238 [exp]	56.9	0.8083

Compare expression of checked genes

Lus10038547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.