Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20640 194 / 2e-56 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 170 / 8e-48 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29100 124 / 7e-31 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 120 / 7e-31 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 122 / 1e-30 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G21340 117 / 2e-29 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 119 / 7e-29 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 112 / 4e-28 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 105 / 1e-26 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 105 / 2e-24 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014807 [exp] 321 / 7e-105 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 188 / 3e-55 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 186 / 1e-54 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 122 / 1e-30 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010638 [exp] 119 / 3e-29 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013874 [exp] 117 / 7e-29 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 109 / 4e-28 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 108 / 8e-28 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10014279 [exp] 106 / 5e-24 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410600 [exp] 256 / 6e-80 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 256 / 7e-80 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 209 / 2e-61 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 202 / 3e-59 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G051600 [exp] 134 / 3e-35 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 134 / 3e-35 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 128 / 4e-33 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 126 / 1e-31 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G098900 [exp] 122 / 4e-30 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 117 / 9e-30 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038550 pacid=23143080 polypeptide=Lus10038550 locus=Lus10038550.g ID=Lus10038550.BGIv1.0 annot-version=v1.0 ATGGCAGATGAGTTCAACACCAGTAGCATCAACTGGTGGGATTCTACTTCAAGAACCGACGGAGGAGGAGGAGCAGCAGCAGCCTCCTCTTCTTCAGGAG GAGGAGGTGGCGGATGCTTCAGTTGGGCATCAACACCTGACATGTCGGATGCTGTCAAGTCAGGTGGCGGCAGCGGAGGTGGTAGGTCATCTTTGGATTC GGTCTCAGTATCAACGACAGCTGACAATTCATCAGCCGATCATATCCATATGATGGGGTTAGGCCTTTCCTCCCATGCCATGGACTGGAACCAAGCATTA CTCCGGGGGGAGAAAGGGACAGATCATCACCACCACCAACACCAGAGTAGCTTCCGGTCAATGTTACAGATTGAGAATCTAAATTCAACCCCACCCATTT ATAACGAACCGGGCGGCGGCGGAGGCGGAGCAGGAGGAGGGTTGTGGAGAGAGAGGTCCACGTCATCAGTTTACAGCTCGGAAAACTCCAACTCCATGAA TAATGAGTTCAAGCAAATCGCTAGAGGATTCTCCTTAGACCAACCAACTGCTGTACACGATTTCTGCCACCTCAACCCACCTGACACGTCAGCCACAGGT TTCCAATTGGGTTCTGGCGGCGGCGGTGTTATGTTTGAGGGAGGAGGAGAAGTACTGTTGGGATCCGAACCCAACCAGCATGCTTCGTTGATGGGGAACT ACCCGCCGCCGTCATACGGTGGAGGAGGAGGTACTAGTACTAGTACGGCCACTGCCGCCAATTTCGGCATTGTTGGTACTGGTAGTAACGACTTGTCGTC CGTGAATTGGTCTAGTAATAATAATAAAGTCCCTCAGTTTCTGAGAAGTAATTCGCCGCCGCCAAAACACAGCCAACTACACTTTTCAAATAATGCTCCC TTCTGGAATGCATCGGGTGCCATGACTACTGATGTCCGGCCACCGGGCGGCGGCTTCTTCCCGCAGTCATCTCCCCAACAGCATCACCACTTTCCGGCTG CAGCCTCAACTTTTGATGATAAACCACCAAAGAATATAGGGGAGGAAAGGAATTCAAGCGCATTGGTGGTGGTAAAGAAAAGTGAAGGAGGAGGAGGAAC CAATAAAAGAAGTAGGAATGAAACTGCAGCATCTACTTTACCAGCCTTTAAGGTAAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAACAATTG GTTTCACCTTTTGGAAAGACAGATACAGCTTCAGTGCTATCTGAAGCAATCGAATACATCAAATTCCTACATGACCAAATCAATGTATTGAGCACCCCAT ACATGAAAAGTGGAGTTCCCATACACCATCAACAGCAGAGTTGTGATCATCATCATCAGAAATCAAAGGACACAGCAGAAGCACAAAAGGACCTTCGGAG CAGAGGACTCTGTCTGGTTCCGGTTTCGAGCACTTTTCCAGTCACTCACGAGACTACCGTCGATTTTTGGACCCCGACATTCGGAGGAACATTCAGATAA
AA sequence Show only first row Show all	>Lus10038550 pacid=23143080 polypeptide=Lus10038550 locus=Lus10038550.g ID=Lus10038550.BGIv1.0 annot-version=v1.0 MADEFNTSSINWWDSTSRTDGGGGAAAASSSSGGGGGGCFSWASTPDMSDAVKSGGGSGGGRSSLDSVSVSTTADNSSADHIHMMGLGLSSHAMDWNQAL LRGEKGTDHHHHQHQSSFRSMLQIENLNSTPPIYNEPGGGGGGAGGGLWRERSTSSVYSSENSNSMNNEFKQIARGFSLDQPTAVHDFCHLNPPDTSATG FQLGSGGGGVMFEGGGEVLLGSEPNQHASLMGNYPPPSYGGGGGTSTSTATAANFGIVGTGSNDLSSVNWSSNNNKVPQFLRSNSPPPKHSQLHFSNNAP FWNASGAMTTDVRPPGGGFFPQSSPQQHHHFPAAASTFDDKPPKNIGEERNSSALVVVKKSEGGGGTNKRSRNETAASTLPAFKVRKEKMGDRITALQQL VSPFGKTDTASVLSEAIEYIKFLHDQINVLSTPYMKSGVPIHHQQQSCDHHHQKSKDTAEAQKDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10038550 [exp]	0	1
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	1.4	0.9424
					Lus10005454 [exp]	2.4	0.9162
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	3.0	0.9076
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	6.9	0.8990
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	9.4	0.9066
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	9.8	0.8799
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	14.4	0.8893
AT3G59110			Protein kinase superfamily pro...		Lus10020747 [exp]	14.9	0.9030
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	17.0	0.8781
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	17.7	0.9003

Compare expression of checked genes

Lus10038550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.