Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 696 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 665 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 661 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 649 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 635 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 610 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 609 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 588 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 587 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11280 554 / 0 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014811 [exp] 1387 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 851 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 811 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 771 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 764 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 761 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 755 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 753 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 750 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G413800 [exp] 1104 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 904 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 865 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 863 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G126151 [exp] 856 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413700 [exp] 855 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 848 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 845 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 842 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 842 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10038553 pacid=23143020 polypeptide=Lus10038553 locus=Lus10038553.g ID=Lus10038553.BGIv1.0 annot-version=v1.0 ATGAGCTGCGCAAGCATGAACGGGCAATCATCCACAGCGTTTGGTGTTGTCGCCATCCTGTTGTCTCTTCTTCTATTCACCTCCTCCCCAGTTGCTGCTG CTGCAGTGGATTCCATCAATGCAACTGAATCGTTACTAGTCGGGTCCACACTAACTTCTTCAGGCGGAAGCTTTGAGCTTGGTTTCTTCTCTCCACCAAA TACCCAAAACCGCTACTTGGGAATATGGTACAAGAAAATGATCTCAAGCTTCACCGTCGTCTGGGTCGCCAACAGAAATTCCCCTTTGAACAATTCTTCC CCTGTAGGCATCCTCACATTCATAGACAGAAACAATCTCGCCGTTATCGATAACGGTAATGGCAGCAGAAGTAGTAGTAGTAGAAGTATTCTATGGTCAA CCAATTCGTCAGGACCAGCATCGGCAATCAGCCCAATTGCACAGCTTCTTGAAACCGGAAACTTCGTCATCCGAGATGGAAGCAACCCTGAAAAGTTCCT GTGGCAGAGTTTTGATTTTCCTGGCGACACATTCTTGCCAGGGATGAAGTACGGGATAGACTTGAGGACAGGGCTCAATCGGGCCTTGACCTCCTGGAAA ACTCCCACTGATCCAGGAGTTGGCAGCTATGCCAACACAATGGATCCAAGCGGGGTTCCGCAGTTCTTTTTGACCCGCGGGTCATTTGTAGATTTCAGGT CAGGTTCATGGAACGGGAAGCAGTTCGGTGGGATGATCAATCTGAAACCTAACCCTATTTACACGTATGAGTTTGTTTCCAACGCAGACGAGATATATTA CCGTTATGAGCTGATAAACAGGTCGGTGGTGTCAAGGATGGTATTGACCTCTGAAGGAAATTTGCAACGATTCACTTGGGTTGAAAGAACCCAAGAGTGG AACCTCTACCTTACGGCACACACTGATAACTGCGACAGGTATGAACTGTGTGGTCCGAATGGCATCTGTAACATCAACAACTCCCCTGCCTGTGCATGTC TCACCAGGTTTGTCCCCAAGTTTGCCAACGAATGGAACACTGCTGATTGGTCTAATGGGTGTGGTCGAGCCGTCCCATTGGATTGCAGCCCTGGTGAGGG CTTTGTTATGTATTCTGGAATCAAGATTCCAGATACGAGGCAGTCATGGTATAACACTACGATGGAGCTCAATGAGTGTGAGAGGAGATGCAGGGACAAC TGTTCTTGCACAGCTTATGCAAATATGGATGTTAGGAATGGAGGAAATGGCTGCATCTTGTGGTTTGGTGACCTCCTGGATATTAGACAGTACAATGACA ACAATGGGCAGGACGTTTACATCAGATTGGCTGCCTCTGAAATGGAAAAATATAGAAGATCCAATGGGAAGAAACGAGTTAAGATCATAGTAATCCCTGT ATCAGTAGTTGGATTCATTCTTTTATTTCTTTGTGTTATCTTGAGAATCCAAAGGAGGAGGAGACAGCTTAGAATACAAGCAAGTATGGCACCAAGTCCA GAAGAAACAGAAGAAGATGACGACGAGGAGGAAGATGAGGAGGAGCACATGAATGGACACAGCAATAGGGATTTAGAGCTACCGTTATTCCAATTCGCTA CCATAGCTGATGCTACCAATAACTTCTCGTCAAACAATAAGCTTGGCCAAGGTGGTTACGGACCGGTTTACAAGGGAATCCTGAAAAACGGAAGGACTAT AGCAGTGAAGAGGTTGTCCAAGAGGTCGAGACAAGGAACCCATGAGTTCAAGAATGAAGTTGTTTGCATTGCCAAACTACAGCACAGGAATCTTGTGAAG CTTTTAGGATGCTGCATTCAATCGGATGAAAGGATGCTGATCTATGAATACATGCCCAACAAAAGCTTAAACTTCTTTATTTTCGATAAAAGACGAAGCG TGTTACTGGATTGGCGTAAGCGACTCCACATCATCAACGGCATCGCCAGAGGACTTCTTTACCTTCATCAAGATTCAAGGCTGAGAATAATCCACAGAGA CATGAAAGCAAGCAATGTGTTGCTTGACGATGAGATGAACCCCAAAATTTCAGACTTTGGTATGGCGAGGAGCTTTGCAGGAGATGAAAGTAGTGCAAAC ACTAACAGAATAGTTGGAACATATGGTTACATGTCTCCGGAGTATGCCATCGATGGTCTCTTCTCCGTAAAATCAGACGTGTTCAGCTTTGGAGTCTTGG TACTGGAGATAATAAGTGGAAGGAAGAATAGAGGGTTCTCTCACACAGACCACAAGCTAAATCTTCTTGGCCATGCATGGATGCTTCACAAAGAAGGTAG ATCACATGATCTGGCTGATGAATGCATAAGGAGCACCTGTAGCGATTTAGCAGAGGTGGAGCGAGCGGTCCACATAGGATTGATGTGTGTGCAGCAGAGT CCAGAAGATAGGCCAAACATGTCAAGCCTAGTTGTGATGTTGAGCAGTGAGATTGAACTAGCTCAACCAAAAGAGCCTGGCTTCTTCACTGAAAGGGATA TCCTTGAAGCAACTTCTTCAATGAGCAAGCATGAATACTCTTCTTCCAACAAGCTGTCTGAAACCCTCATAGATGCTCGATGA
AA sequence Show only first row Show all	>Lus10038553 pacid=23143020 polypeptide=Lus10038553 locus=Lus10038553.g ID=Lus10038553.BGIv1.0 annot-version=v1.0 MSCASMNGQSSTAFGVVAILLSLLLFTSSPVAAAAVDSINATESLLVGSTLTSSGGSFELGFFSPPNTQNRYLGIWYKKMISSFTVVWVANRNSPLNNSS PVGILTFIDRNNLAVIDNGNGSRSSSSRSILWSTNSSGPASAISPIAQLLETGNFVIRDGSNPEKFLWQSFDFPGDTFLPGMKYGIDLRTGLNRALTSWK TPTDPGVGSYANTMDPSGVPQFFLTRGSFVDFRSGSWNGKQFGGMINLKPNPIYTYEFVSNADEIYYRYELINRSVVSRMVLTSEGNLQRFTWVERTQEW NLYLTAHTDNCDRYELCGPNGICNINNSPACACLTRFVPKFANEWNTADWSNGCGRAVPLDCSPGEGFVMYSGIKIPDTRQSWYNTTMELNECERRCRDN CSCTAYANMDVRNGGNGCILWFGDLLDIRQYNDNNGQDVYIRLAASEMEKYRRSNGKKRVKIIVIPVSVVGFILLFLCVILRIQRRRRQLRIQASMAPSP EETEEDDDEEEDEEEHMNGHSNRDLELPLFQFATIADATNNFSSNNKLGQGGYGPVYKGILKNGRTIAVKRLSKRSRQGTHEFKNEVVCIAKLQHRNLVK LLGCCIQSDERMLIYEYMPNKSLNFFIFDKRRSVLLDWRKRLHIINGIARGLLYLHQDSRLRIIHRDMKASNVLLDDEMNPKISDFGMARSFAGDESSAN TNRIVGTYGYMSPEYAIDGLFSVKSDVFSFGVLVLEIISGRKNRGFSHTDHKLNLLGHAWMLHKEGRSHDLADECIRSTCSDLAEVERAVHIGLMCVQQS PEDRPNMSSLVVMLSSEIELAQPKEPGFFTERDILEATSSMSKHEYSSSNKLSETLIDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	0	1
					Lus10012065 [exp]	2.0	0.9459
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	3.2	0.9550
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	3.7	0.9529
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	5.7	0.9459
AT3G43740			Leucine-rich repeat (LRR) fami...		Lus10002117 [exp]	6.5	0.9307
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	6.5	0.9420
AT4G10300			RmlC-like cupins superfamily p...		Lus10035660 [exp]	9.4	0.9348
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	10.0	0.9437
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10022329 [exp]	10.5	0.9329
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	14.5	0.9400

Compare expression of checked genes

Lus10038553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.