Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 768 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 702 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 693 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 689 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 680 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 658 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 636 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 607 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 598 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 592 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014813 [exp] 904 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 879 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 824 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 821 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 775 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 773 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 763 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 762 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 749 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G414077 [exp] 967 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 920 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 915 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 912 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 900 / 0 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 885 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 885 / 0 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 867 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 850 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 849 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10038554 pacid=23143073 polypeptide=Lus10038554 locus=Lus10038554.g ID=Lus10038554.BGIv1.0 annot-version=v1.0 ATGGCAGGGATAACAGTGCTTGTATGCGCCTTCATATTCCACTTCTCAACAACTTGTAGTGCTCAGGATACCCTTAAACCAGGAGAGACCCTGATAGATG GTGAGATTCTAGCTTCAGCAGGAGGAAGATTTGAGTTGGGATTTTTTAGCCCGCTGAGATCAAGAAACCGGTTCCTGGGAATATGGTATAAGAATATCAC TCCTCAGACCGTTGTGTGGGTAGCCAATAGAGAAGCACCAATAGCAGAGAGGGTTGGAGTTGCAAATATCACCAGCCAAGGAAAACTTACTCTCCTTGAT GCAACAACGCAGACTCTTGTCTGGTCTTCGAGTTCATCAAGATCTCCGCAATCTCCTGTTGTAGAACTCCTAGACTCGGGGAATCTGATTGTAAAAGATA GGAAAACCGATAATCCTGACAACTTTATTTGGCAGAGTTTCGATCACCCTTGTGATACATTGCTCCCAGGAATGAAGATGGGCAAAGTAAATGGCCTGGA CAAGCCTTTAATATCTTGGAAGAGCACTGAAGATCCAGCCAAGGGGGAATACTCTCTGGAAATCGATGCTCGAGGATACCCACAAGGATATCTGAAGAAG GGAAATAGAATTATGTTCAGAAAAGTCCATTCGTGGGGCGACCTGTTTACTAGAACTTCTGTGCTGCAGCAAAGTCCAACAGTAACATATGAGTTTGTGT TCGACAAAAATGAGGCGTATTTCAAGTTTGAAACCACAGGCGCCTCAGCGATTTCAAGATATACAATATATCCATCAGGCCTCCTTCAACGCTACTCCTG GAATGATGAAACAAATAGCTGGATGGTTTTGTCCACAGGTCAGGTAGATAAGTGTGAGAATTATGCTCTTTGTGGTGCATATGGCACTTGTTATATACAC AATTCTCCGCCATGTTCATGCTTGGATGGTTTTAGGCCAAAGTCTCCAGCAGATTGGAACTTGACAAAGTGGTCTGCTGGCTGCGTTCGAAAGACACCAC TCAGTTGCAACAGGAATGATGGATTTCTTAAGTATGGCGGAATGAAAGTACCAGACACATCTTCTAGTTTGTACATCAGGAGTATTCATCTATCAGAATG TGAAGGTTTGTGCTTGAATAACTGTTCTTGCACTGCATATGCAAGTTCGGATATCAGCAACGGTGGGAGTGGTTGCCTGCTATGGTTCAGTGATCTAACT GATATAAGAGGATCAGCCGATAGTGGACAAAACCTCTATGTGAAGGTAGCAGCACCAGAGTCTGATCAATTCGGAGAGACACGGACTTCCAACGAGAAAA AGAGGGCAATAATAATTGCTACCGTTGTGACGGTGCTATTTCTGAGCCTCGTGGCATTAGGAATAGGCTGCTACATCAAAAGGAGAAGAAAACTCAGGAT GACAGGAAAAGCAGAGGGGTTACCAATATTTGATTTAAATACAGTAGCAGCAGCCACAAATAACTTTTCGAGCAGCAATAAACTTGGAGAAGGTGGATTT GGACCTGTCTACAGGGGTAGATTACCAGAAGGGCAAGAAATAGCAGTAAAGAGGCTCTCCAAGAGCTCCGGACAAGGACTGAACGAGTTCAAAAACGAAG TCGTACTTTTTTCCAAACTGCAGCATCGTAACCTAGTGAAGCTTCTTGGCTGTTGCATTTGTGAAGATGAGATGATGTTGATCTATGAATACATGCCAAA CAAATGTCTAGCCTCTTCAATATTTGATAAATCGAGACGCAAGAAACTAGACTGGTGTAAGCGAATGCAAATCATAGATGGAGTAGCGCGAGGGCTTCTC TATCTTCATCAAGACTCAAGACTCAGGATCATCCACAGAGATCTCAAAGCCAGCAACATTTTACTGGACAATGACATGAAACCAAAAATATCAGACTTTG GCCTTGCAAAAACATTTGGAGTGGATCAAACTGAGGCCAAAACAACTCGCGTAGTTGGGACACATGGATACATGTCCCCAGAGTATGTTGCGGATGGGAA ATACTCCATGAAATCCGACATCTTTAGCTTTGGCGTGCTGGTTCTGGAGATAGTAAGCGGGAAACGAAACAGGGGATTCCATCATACTTCCAATGACTTT AACCTTCTTGGCCATGCATGGACACTATGGATGGAAGGATCCGTACTAGAAACAGTCGACGAATGTCTGATAGAATCCTGCAATGCTTCCCCATCAATAT TATTAAGATACATTCAAGTAGCTTTGATGTGCGTGCAACAACGACCAGAGGACAGGCCAAACATGTCATCAGTGGTTCTGATGTTAGGCAGTGTGGATCC CCTGCCACAACCTAAACAGCCCGGTTTTTTTATAGCAAGGAATCCAATGGATGTAAGGGACGATTTATCAACCAAGAATGAGTCGCAGTCAGTAAATGAA GTCACAGTGACTGTGTTGGAAGCGAGGTGA
AA sequence Show only first row Show all	>Lus10038554 pacid=23143073 polypeptide=Lus10038554 locus=Lus10038554.g ID=Lus10038554.BGIv1.0 annot-version=v1.0 MAGITVLVCAFIFHFSTTCSAQDTLKPGETLIDGEILASAGGRFELGFFSPLRSRNRFLGIWYKNITPQTVVWVANREAPIAERVGVANITSQGKLTLLD ATTQTLVWSSSSSRSPQSPVVELLDSGNLIVKDRKTDNPDNFIWQSFDHPCDTLLPGMKMGKVNGLDKPLISWKSTEDPAKGEYSLEIDARGYPQGYLKK GNRIMFRKVHSWGDLFTRTSVLQQSPTVTYEFVFDKNEAYFKFETTGASAISRYTIYPSGLLQRYSWNDETNSWMVLSTGQVDKCENYALCGAYGTCYIH NSPPCSCLDGFRPKSPADWNLTKWSAGCVRKTPLSCNRNDGFLKYGGMKVPDTSSSLYIRSIHLSECEGLCLNNCSCTAYASSDISNGGSGCLLWFSDLT DIRGSADSGQNLYVKVAAPESDQFGETRTSNEKKRAIIIATVVTVLFLSLVALGIGCYIKRRRKLRMTGKAEGLPIFDLNTVAAATNNFSSSNKLGEGGF GPVYRGRLPEGQEIAVKRLSKSSGQGLNEFKNEVVLFSKLQHRNLVKLLGCCICEDEMMLIYEYMPNKCLASSIFDKSRRKKLDWCKRMQIIDGVARGLL YLHQDSRLRIIHRDLKASNILLDNDMKPKISDFGLAKTFGVDQTEAKTTRVVGTHGYMSPEYVADGKYSMKSDIFSFGVLVLEIVSGKRNRGFHHTSNDF NLLGHAWTLWMEGSVLETVDECLIESCNASPSILLRYIQVALMCVQQRPEDRPNMSSVVLMLGSVDPLPQPKQPGFFIARNPMDVRDDLSTKNESQSVNE VTVTVLEAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	2.8	0.9268
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	6.2	0.9266
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	9.0	0.9037
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	11.0	0.9049
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	11.7	0.9263
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	15.9	0.9084
AT1G67000			Protein kinase superfamily pro...		Lus10014923 [exp]	18.7	0.8973
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	18.8	0.9229
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	22.6	0.8927
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	22.9	0.8907

Compare expression of checked genes

Lus10038554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.