Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27300 167 / 3e-48 S-locus lectin protein kinase family protein (.1) AT4G27290 153 / 2e-43 S-locus lectin protein kinase family protein (.1) AT1G65790 137 / 1e-37 ARK1 receptor kinase 1 (.1) AT1G65800 137 / 2e-37 ARK2 receptor kinase 2 (.1) AT4G21380 135 / 5e-37 ARK3 receptor kinase 3 (.1) AT4G23150 131 / 9e-36 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23200 131 / 9e-36 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23140 130 / 3e-35 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23180 129 / 8e-35 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G03230 129 / 9e-35 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014812 [exp] 271 / 2e-86 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 191 / 7e-57 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 190 / 7e-57 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 178 / 3e-52 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 176 / 4e-51 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 164 / 3e-47 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 157 / 1e-44 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 156 / 2e-44 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 152 / 2e-43 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125050 [exp] 197 / 3e-59 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414000 [exp] 189 / 4e-56 AT4G27290 766 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 185 / 9e-55 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 183 / 4e-54 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 182 / 1e-53 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 181 / 2e-53 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 181 / 4e-53 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412000 [exp] 180 / 5e-53 AT4G27290 815 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 180 / 6e-53 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 180 / 7e-53 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Lus10038555 pacid=23143014 polypeptide=Lus10038555 locus=Lus10038555.g ID=Lus10038555.BGIv1.0 annot-version=v1.0 ATGTCGCAGACATGGAAGTACAGAGTCCATTCGTTGCAGTCTGCTTCGAAGATGCAGCTAGTCACACGGCTAGTTCATGTTCCCACCGGCTGCGGCTACA TGTCTCCTGAGTATGCCATTGATGGTCTTTTTTCAATGAAATCCGATGTGTATAGTTTTGGGGTTTTGACGCTTGAAATCATTAGTGGGAAGAAGAATAG AGGATTCAGCCACAAAGATCACAACCTTAACCTTCTTGGTCATGGATGGAGGTTATCGATGGAAGGCAGGCCAATTGAGCTAGCCAGCAATGGTAGGGAT GAACCCTCCATTATGATTGAAGTACTAAGATGCATTCATGTGGGTCTCCTATGCGTTCAACAAAAACCAGATGACAGGCCAAGCATGTCATCCGTGGTTG TGATGTTAAGCAGTGATATTCTGCTCCCTCCGCCAAAGCAACCTGGTTTTTTCACAGAGCGGAATGCGCCTGCCACCAAGTTCTCCTCGGATAAGATTTC TACCTCATCGGTGAACGAAGTTACTATGACACTTCTAGATGCGAGGTAG
AA sequence Show only first row Show all	>Lus10038555 pacid=23143014 polypeptide=Lus10038555 locus=Lus10038555.g ID=Lus10038555.BGIv1.0 annot-version=v1.0 MSQTWKYRVHSLQSASKMQLVTRLVHVPTGCGYMSPEYAIDGLFSMKSDVYSFGVLTLEIISGKKNRGFSHKDHNLNLLGHGWRLSMEGRPIELASNGRD EPSIMIEVLRCIHVGLLCVQQKPDDRPSMSSVVVMLSSDILLPPPKQPGFFTERNAPATKFSSDKISTSSVNEVTMTLLDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27300			S-locus lectin protein kinase ...		Lus10038555 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	6.0	0.8723
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	6.3	0.8691
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10005825 [exp]	11.8	0.8950
AT3G58360			TRAF-like family protein (.1)		Lus10012948 [exp]	19.0	0.8801
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	19.6	0.8466
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	21.3	0.8813
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	22.7	0.8771
					Lus10012313 [exp]	32.6	0.8579
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	34.6	0.8672
					Lus10011947 [exp]	38.7	0.8244

Compare expression of checked genes

Lus10038555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.