Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 773 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 753 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 705 / 0 ARK3 receptor kinase 3 (.1) AT1G11340 693 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 662 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 651 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 649 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 635 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 612 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 589 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037865 [exp] 1530 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 811 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 803 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 798 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 792 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 781 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 772 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 769 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 763 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125100 [exp] 995 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 915 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 865 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 857 / 0 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 856 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 855 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 845 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 844 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 841 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414200 [exp] 841 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10038557 pacid=23143004 polypeptide=Lus10038557 locus=Lus10038557.g ID=Lus10038557.BGIv1.0 annot-version=v1.0 ATGGACGATGTATTAACTATGCTGCTGTTAGCTGCTGCGTTAATGCTCTCTTCTGTCGCCCCATCTACAGTTGTTGACACGATTGGTCCAGGCCAGTCTA TCAAGGACGGAGAAACCTTGGTTTCCAGTGGCGAGTCTTTCGAGCTAGGCTTCTTCAGTCCTGGAACTTCAACATCCCGCTACTTGGGCATCTGGTACAA GAAAATCGCCACTGGAACTGTTGTGTGGGTAGCTAACAGAGAAACTCCAATCCTGGATGCCTCCGGAGTCCTCAAACTCACTCCACAAGGACTTCTTTAC CTCATCCAGACCACCACCAATCGCACCGTCTGGTCATCAAATCTGGACAAATTAGTAGCAAACAGTCATGATCAGCCGGCTGCCCAGCTCTTGGATTCAG GAAATTTCGTCGTCATATCAAACTCAGAAGATGCTTATAATAGTTATTTGTATCAGAGCTTCGATTACCCGACTGACACCGTCTTGCCTGGAATGAGACT GGGGAAAAACCTCCTCACAGGGTTAGATTGGTCAATAACGTCATGGAAATCGTTAAACGATCCAGCAAAAGGAGAATACTCTTTGGGAATCGATCCCACT GGGTATCCGCAGATGGTGGTGAGGCAGGGGAATGATACAATCTTCAGGGTAGGATCCTGGAACGGGATCCGGTTCACTGGAACTCGGAGGCAGCAACAGA ATTCTATATGGGAATACAAATTCGTGTTCAACGAGCGAGAGGTTTCGTTACAGACATCCCTTGTGAACAAGTCTGTGCCGTCCAGATTGGTAGTGAACGC ATCCGGAGCGACTGGGAGGCTGTACTGTAAAGACGAGAAGCAAGGTTGGGTAGTTTACTACATGTTGGGTGCGGACCAGTGTGACCAGTATTCCAAATGT GGTGTCAATGCGAGGTGTGACATTGACGGCACTAGATATTGTAAATGCTTAGATGGGTTTCGACCCAAATCGCCCACCGATTGGGCGGTTCAGGACTGGT CGAGCGGGTGTGTAGCGGCTAGTCCTTTGAGTTGCAGGAAAGGTGAAGGGTTCGTTCGACTCGAGCAAATGAAGCTGCCTGACACTTCACGATCATGGTT CAACCATACGATGACCCTCCATGATTGTAAGAAGGAGTGTCTGAGAAACTGTTCGTGTACGGCTTACGCGAGTTTGGATGTGTCGGGTGGTGGGAGTGGA TGCTTGATTTGGTTTGGTGATATGGTTGACCTGAGAGGGTTTCCTGAAACCGGCCAAGATCTCTATGTCAGAGTTCCTGCCTCCTACTTAGGTGCCATGA AGAGGAAAACGAGAAAGGAACAAGGGAAGAGGATTGGGCTAATGGTATGTTCATTAGCAATTATGGTGACGGTTGTAGTATTGGGATGGAGCCTTTGTTT CAGGGGAATTAAACGAAGATTTCACGGGAAAAAGAAGTCCTCCATGGGAAAGGGTTACAATAATGATGACTTGGAGCTGCCGATATTTGATTTTAACACG ATTATGAATGCCACCGGTAATTTTTCCGCTGATAACAAGCTTGGCGAAGGAGGATTTGGACCTGTTTACAAGGGAATATTGTTTGACGGGCAAGAGATAG CCGTGAAACGGCTATCAATGAGCTCTGGACAAGGTCTGGAAGAGTTCAAGAATGAAGTCGTTCTAATATCAAAACTTCAGCACAGGAATCTAGTAAGACT GCATGGTTGCTGCATTGAAGGGGAGGAAAAAATGTTGATCTATGAGTACATGCCCAATAAAAGTTTGGACTACTTCATCTTTGATGAATCGAGAAGGCTA GTGTTGGACTGGTCTAGGCGAATTAGCATTATAGAGGGAATTGCGAGAGGGCTTTTGTATCTCCATCAGGATTCTAGGCTGAGAATCATCCATAGGGATT TGAAAGCTAGTAATGTTCTTCTAGACAATGACCTGAACCCAAAAATTTCTGATTTTGGAATGGCAAGAATGTTTGGCGGAGATCAAACTGAAGATAGTAC AAATCGGGTCGTGGGAACATTCGGGTATATGGCACCGGAATACGCGATTGATGGGCTCTTCTCGATGAAATCGGACATCTTCAGCTTTGGAGTATTGGTG TTGGAAGTATTGACAGGAAAGAAAAACAGAGGATTTTTTACCATGGATCATGGTCTCAATCTTCTTGGACACGCATGGAAGCTGTGGATGGAAGAGAAGC CATTGGAAGTGGTTCGAGAGGAGTATCGGGCCGGGACGATAGGGATCGTTGATGTAGTGAAGAGACACATTCAAGTGGGATTGTTGTGCGTTCAGCAAGA GCCTGAAGATCGGCCCACCATGTCGTCGGTGGTGCTGATGTTGGGGGGTGACAGCGTGCTACCTGAACCTAAGCAGCCTGGGTTCTTCTCTGAAAGAAGG TTGCCAGAGATGTATGAATGTTGTTCAATCCGGTGCTCGAATTGCAAATCTCGTTCTATCAGTGAAATCACCGCCACCGAGTTACTTCCTCGCTAG
AA sequence Show only first row Show all	>Lus10038557 pacid=23143004 polypeptide=Lus10038557 locus=Lus10038557.g ID=Lus10038557.BGIv1.0 annot-version=v1.0 MDDVLTMLLLAAALMLSSVAPSTVVDTIGPGQSIKDGETLVSSGESFELGFFSPGTSTSRYLGIWYKKIATGTVVWVANRETPILDASGVLKLTPQGLLY LIQTTTNRTVWSSNLDKLVANSHDQPAAQLLDSGNFVVISNSEDAYNSYLYQSFDYPTDTVLPGMRLGKNLLTGLDWSITSWKSLNDPAKGEYSLGIDPT GYPQMVVRQGNDTIFRVGSWNGIRFTGTRRQQQNSIWEYKFVFNEREVSLQTSLVNKSVPSRLVVNASGATGRLYCKDEKQGWVVYYMLGADQCDQYSKC GVNARCDIDGTRYCKCLDGFRPKSPTDWAVQDWSSGCVAASPLSCRKGEGFVRLEQMKLPDTSRSWFNHTMTLHDCKKECLRNCSCTAYASLDVSGGGSG CLIWFGDMVDLRGFPETGQDLYVRVPASYLGAMKRKTRKEQGKRIGLMVCSLAIMVTVVVLGWSLCFRGIKRRFHGKKKSSMGKGYNNDDLELPIFDFNT IMNATGNFSADNKLGEGGFGPVYKGILFDGQEIAVKRLSMSSGQGLEEFKNEVVLISKLQHRNLVRLHGCCIEGEEKMLIYEYMPNKSLDYFIFDESRRL VLDWSRRISIIEGIARGLLYLHQDSRLRIIHRDLKASNVLLDNDLNPKISDFGMARMFGGDQTEDSTNRVVGTFGYMAPEYAIDGLFSMKSDIFSFGVLV LEVLTGKKNRGFFTMDHGLNLLGHAWKLWMEEKPLEVVREEYRAGTIGIVDVVKRHIQVGLLCVQQEPEDRPTMSSVVLMLGGDSVLPEPKQPGFFSERR LPEMYECCSIRCSNCKSRSISEITATELLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10038557 [exp]	0	1
					Lus10021794 [exp]	7.0	0.6859
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	9.4	0.7350
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	13.4	0.6993
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	24.2	0.6753
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10024359 [exp]	25.8	0.6517
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	28.9	0.6509
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10027709 [exp]	29.3	0.5950
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	30.0	0.6714
AT5G04347			Plant self-incompatibility pro...		Lus10016171 [exp]	31.1	0.6633
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026690 [exp]	32.6	0.5480

Compare expression of checked genes

Lus10038557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.