Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79860 558 / 0 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 545 / 0 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT3G24620 534 / 0 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 531 / 0 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT5G19560 471 / 4e-164 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT3G16130 462 / 2e-159 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT5G02010 382 / 2e-128 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 381 / 6e-128 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 368 / 4e-122 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G00460 358 / 6e-120 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037866 [exp] 854 / 0 AT1G79860 591 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10025797 [exp] 675 / 0 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10035865 [exp] 674 / 0 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10034927 [exp] 557 / 0 AT3G24620 564 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Lus10009874 [exp] 377 / 4e-126 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 377 / 1e-125 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 380 / 2e-125 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10023983 [exp] 376 / 3e-125 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 375 / 5e-125 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052600 [exp] 629 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.001G183800 [exp] 612 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.018G082400 [exp] 567 / 0 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Potri.009G140100 [exp] 394 / 1e-132 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.006G092600 [exp] 391 / 5e-131 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.004G179742 [exp] 387 / 4e-130 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 383 / 1e-127 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.010G196000 [exp] 382 / 1e-127 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 383 / 1e-126 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.005G247100 [exp] 373 / 9e-125 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10038560 pacid=23143139 polypeptide=Lus10038560 locus=Lus10038560.g ID=Lus10038560.BGIv1.0 annot-version=v1.0 ATGGACCAGATGAAGGAAAGGTTTGCAAAATTGCTGTTGGGGGAGGACATGTCTGGGGGAGGAAAGGGCGTCTCATCTGCTTTAGCATTGTCTAATGCGA TCACAAATCTTGCTGCTTCTGTATTCGGAGAGCAATGGCGTCTGGAGCCAATGTCAACGGAGAGGAAAACAAGGTGGAGAAGGGAAATTGACTTGTTGTT ATCTGTAACAGATCACATTGTTGAATTTGTTGCTTCTCAACAGGGTAATATGGAGATAATGGTGACAAGACAAAGAAACGACCTTCTGATGAACATCCCA GCCTTGCGGAAGCTGGATGCCATGCTAATTGACTGCCTAGACAACTTCAAAGACCAAAGTGAGTTCACATATGTGTCGAGAGATGCACCAGACTCAGAGA AAGGAGCAAAGCGGAAAGAGGAGAAATGGTGGTTACCTACTGTCAAAGTCCCGGCAAACGGCCTTTCGGAGTCTGCAAGAAAATTGATTCAAACCCAAAA GGACTCTGTCAATCAGGTCCTCAAAGCTGCCATGGCTATCAATGCTCAAGTATTGGCAGAAATGGAGATTCCTGAGAGCTACATTGAATCACTTCCCAAG AATGGGAGAGCAAGTCTTGGGGATGCGGTTTACAGGTCGATTACAGTAGAGAATTTTGACCCGGACCAATTCCTCAACACAATGGATTTGAGTTTGACAT CAGAACACAAAATCCTGGACCTTAAAGACAGGATAGAAGCATCGATTGTGATATGGAAGAGGAAGATGAACCAGAAAGATGGTAAATCAGCTTGGGGATC AGCGGTCAGCTTGGAGAAAAGAGAGCTCTTTGAGGAAAGAGCTGAGACCATTTTGATCATAATGAAACAGAGGTTTCCTGGAATCCCACAGTCTGCTCTT GACATCAGCAAAATTGAATCCAATCGGGATATAGGACAGGCGATCCTCGAAAGTTACTCAAGAATTCTAGAGAGTCTAGCATTCACAGTGCTGTCACGTA TTGAAGATGTGCTGTATTCAGACCACTGTGCGAGGAATCCAACTCAGGCTGCAGTGGGGGCACCAAAGAGGAGCCCGTTGTCGCAAGGAGAGACCCCAAC AGGAGAGGATGAACAGCAAGGATCATCTCCAATGACACTGTTGGATTTCATGGGATGGGATCAGAATGATAATGAAGCTGATGATGCTACTGCTGCTGCT AACTGTGCCGAGGATATTCAGAAACAAGATGCTAAGCTTTCAGAGAAACTTGCGGATGTGGATACCACCACCAACAAGCCTTCCTATCTTGCCAGTCTGG TTGGTTCAAGAAGTCCAACATCCAGGGACTAA
AA sequence Show only first row Show all	>Lus10038560 pacid=23143139 polypeptide=Lus10038560 locus=Lus10038560.g ID=Lus10038560.BGIv1.0 annot-version=v1.0 MDQMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASVFGEQWRLEPMSTERKTRWRREIDLLLSVTDHIVEFVASQQGNMEIMVTRQRNDLLMNIP ALRKLDAMLIDCLDNFKDQSEFTYVSRDAPDSEKGAKRKEEKWWLPTVKVPANGLSESARKLIQTQKDSVNQVLKAAMAINAQVLAEMEIPESYIESLPK NGRASLGDAVYRSITVENFDPDQFLNTMDLSLTSEHKILDLKDRIEASIVIWKRKMNQKDGKSAWGSAVSLEKRELFEERAETILIIMKQRFPGIPQSAL DISKIESNRDIGQAILESYSRILESLAFTVLSRIEDVLYSDHCARNPTQAAVGAPKRSPLSQGETPTGEDEQQGSSPMTLLDFMGWDQNDNEADDATAAA NCAEDIQKQDAKLSEKLADVDTTTNKPSYLASLVGSRSPTSRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10038560 [exp]	0	1
AT1G56140			Leucine-rich repeat transmembr...		Lus10010927 [exp]	1.4	0.8424
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	6.5	0.7973
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	12.7	0.7768
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	15.0	0.7925
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030934 [exp]	19.0	0.7425
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10025690 [exp]	21.8	0.8397
					Lus10028962 [exp]	22.4	0.7104
AT4G38060			unknown protein		Lus10001865 [exp]	33.1	0.8025
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023011 [exp]	34.9	0.7993
					Lus10031246 [exp]	43.1	0.7846

Compare expression of checked genes

Lus10038560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.