Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54430 197 / 2e-63 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G27320 184 / 7e-58 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G11360 183 / 9e-58 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT3G21210 119 / 6e-31 zinc ion binding (.1) AT3G03270 58 / 1e-10 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G58450 56 / 1e-09 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G17020 54 / 3e-09 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G53990 48 / 6e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G09740 47 / 2e-06 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G07020 41 / 0.0004 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039730 [exp] 169 / 2e-51 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037867 [exp] 169 / 3e-50 AT1G11360 244 / 1e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10031594 [exp] 154 / 5e-46 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10033749 [exp] 149 / 4e-44 AT1G11360 245 / 1e-81 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10018515 [exp] 83 / 3e-20 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10006701 [exp] 63 / 3e-12 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10016900 [exp] 64 / 8e-12 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10022602 [exp] 61 / 1e-11 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10007043 [exp] 61 / 2e-11 AT2G47710 214 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125500 [exp] 211 / 2e-68 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 195 / 2e-62 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.011G039800 [exp] 176 / 7e-55 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.013G150200 [exp] 153 / 6e-46 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.019G119400 [exp] 141 / 4e-41 AT1G11360 164 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.006G092700 [exp] 61 / 2e-11 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.004G075375 [exp] 58 / 2e-10 AT3G03270 243 / 9e-84 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.010G144100 [exp] 57 / 5e-10 AT3G17020 234 / 3e-80 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G064000 [exp] 52 / 4e-08 AT3G11930 214 / 4e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.016G104600 [exp] 49 / 2e-07 AT3G53990 229 / 6e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10038561 pacid=23143010 polypeptide=Lus10038561 locus=Lus10038561.g ID=Lus10038561.BGIv1.0 annot-version=v1.0 ATGAATCCTCAGCACCAGCAGCAACAACTCGATCCCGATCACCCTCAGCTCCCTACCATCAAGATCCATCACCCTTCCTCCCCTCGCCACTCTCATCACC ACCACCACCATCACATCTCCTCCACCCCCACTCCCACCGCCGGCGCCCGCCGCAAGATCGGCGTCGCCGTCGACCCATCCGACGAGAGCGCCTACGCTGT CAAGTGGGCTGTCGATCACTACATTCGCCCAGGAGATGCCGTTGTCCTCCTCCATGTCAGCCCCACTTCTGTTCTCTTTGGTGCTGATTGGGGCCCACTC CCTTTGTCCACTCCCACCCAAACCCCTCGCCACGGCGAGATCCCTTACAAGATCTATATAGTGAAAGACCACGATATGAAGGAGAGACTGTGCTTGGAGG TGGAGAGGCTGGGATTGAGTGTGGTCATCATGGGAAGTAGAGGCTTCGGAGCTGCCAAGCGGGGCAGCGATGGCAGGCTTGGTAGCGTTAGCGATTATTG TGTTCATCACTGTGTTTGTCCTGTGGTTGTGGTTAGGTTCCCTGAAGACAAAGATGAATCAGAAGGCCCCCAGCCCATGGTCAATGTGCATCTGCACGAG GATGAGGAAGAAGTGCCACATCTCAAAGGTTTGGGTTTCTATGGCTCTTTCGAATTACTAGTATCACGTCATGTTTTCTAA
AA sequence Show only first row Show all	>Lus10038561 pacid=23143010 polypeptide=Lus10038561 locus=Lus10038561.g ID=Lus10038561.BGIv1.0 annot-version=v1.0 MNPQHQQQQLDPDHPQLPTIKIHHPSSPRHSHHHHHHHISSTPTPTAGARRKIGVAVDPSDESAYAVKWAVDHYIRPGDAVVLLHVSPTSVLFGADWGPL PLSTPTQTPRHGEIPYKIYIVKDHDMKERLCLEVERLGLSVVIMGSRGFGAAKRGSDGRLGSVSDYCVHHCVCPVVVVRFPEDKDESEGPQPMVNVHLHE DEEEVPHLKGLGFYGSFELLVSRHVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	0	1
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	1.7	0.9163
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	2.4	0.9009
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	3.0	0.8815
AT5G08060			unknown protein		Lus10040513 [exp]	3.5	0.8981
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	6.0	0.8553
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	6.7	0.8926
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	8.7	0.8732
AT3G05545			RING/U-box superfamily protein...		Lus10029886 [exp]	10.6	0.8193
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	10.6	0.8593
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	12.4	0.8783

Compare expression of checked genes

Lus10038561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.