Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20630 1113 / 0 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) AT1G04850 46 / 0.0001 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT1G51710 44 / 0.0003 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037870 [exp] 1474 / 0 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10008276 [exp] 45 / 0.0002 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 45 / 0.0002 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10037827 [exp] 44 / 0.0005 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10021253 [exp] 44 / 0.0006 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021683 [exp] 44 / 0.0007 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10038183 [exp] 44 / 0.0008 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Lus10041705 [exp] 43 / 0.001 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 43 / 0.001 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408800 [exp] 1193 / 0 AT3G20630 1236 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.011G125800 [exp] 1182 / 0 AT3G20630 1258 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.001G316400 [exp] 50 / 7e-06 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 49 / 8e-06 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.007G063900 [exp] 46 / 8e-05 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.011G152500 [exp] 46 / 0.0002 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 45 / 0.0003 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.005G110500 [exp] 44 / 0.0006 AT2G26000 605 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.003G033700 [exp] 43 / 0.001 AT3G21280 716 / 0.0 ubiquitin-specific protease 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10038564 pacid=23143038 polypeptide=Lus10038564 locus=Lus10038564.g ID=Lus10038564.BGIv1.0 annot-version=v1.0 ATGACTGAGACGTGGCTTATTGCCGCAGCAATCACTGTCGGCTTAGAAGAAGAAGAAAAACTTGGCTCTCTCGTTACCAAAAAATCTGGTTTCAGTTGCC TCACTGTTGCATTGTCTTTACTCAATGTGCTTCTTTTGTTCTTGATTTTTTGTTTCTATGCTTCGGTTGCTTTGATAGCTGCAAAGCAACCTACTCCTGA CGTGATAATGCATAAGATACGCAGATCAGAAGGCGGGTTGTTCATCGACATGAATACATTTCTTGCTTTTGGGAAGGATTGTGTGGCTTGGAACTATGAG AAAACAGGGAACCCAGTTTATTTGCATATAAAGCAGACAAGGAAGTCAATTCCCGAAGACAGACCTTCAAAGAAACCCACCCTGTTGGCTATAGGTATTG AAGGGGGTTTTGACAACAACGATGCTGAGTATGACGAAAGTTACAGCATAGTGGTACTTCCTGAATATGCTACCTCCCCGTTCCCTTCAGTGGAATTACC AGAAAAGGTAAGAGTTGCTGTTGATGCTGTTTTAATGGCTGAAGGTGCTGAGCGGAGGGAGCAACTTGCTGCTTGGACGGCAGACACAAAGAACGTTAGC TCATATGCAATGAACTTAAAGCAGATTGATAATGGCGTCATTGTTCCTCCATCTGGCTGGAAATGTATCAAATGCGATAAAAGAGATAATCTTTGGCTTA ATCTTACTGATGGAATGATCCTTTGTGGCCGAAGGAATTGGGATGGAACTGGTGGCAACAACCATGCAATTGAACACTACAAGGAGACGGGCCATCCTCT TGCTGTGAAACTTGGGACAATAACTTCAGATTTGGAAGCAGCAGATGTTTACTCTTACCCTGAGGATGACAGTGTTTTGGACCCACTTCTGGCGCAACAT TTGTCTTTCTTTGGAATTGATTTTTCATCGTTAAAGAAGACTGAAATGACTACTGCTGAAAGGGAACTTGACCAGAATATCAATTTTGATTGGAATCGAA TTCAAGAAAGTGGGCAGGATTTAGAACCAATTTTTGGGCCAGGTTATACAGGACTTATTAATCTTGGCAACAGCTGCTATATGGCAGCAACTATGCAAGT TGTGTTCTCTACACAGTCCTTCTGTACACGATACTACAAGAATCAAAGCTTGAAATTAGCATTTGAAATGGCTCCTGCTGATCCAACTGTGGACTTGAAT ATGCAGCTGACAAAGCTGGGACATGGTTTACTGTCTGGGAAATATTCGGTTCCTGCTACAGAGATAGATGACGTAGCAGAATCTGTTACGTCTACTAGTA CAAAACATGAAGGGATACCTCCTCGCATGTTCAAAGCCGTTATTGCTGCAAGCCATCCCGAGTTTTCTTCTATGAGGCAGCAGGATGCATTGGAGTTCTT CTTACACTTTCTTGACCAAGTCGAGCGTGGGAATGTGTCTAGACCTGAAGCAGATCCTTCAAGGAGCTTTAAGTTTGGTATTGAAGAGCGTATTCAATGT TCATCTGGAAAGGTTACATACAACCAAAGGCATGACTATATTCTTTCCCTGAATATTCCCTTGCAAGAAGCTACCAACAGAGAAGAATTTGACGCTTCCC TGAAATTAAAAGCAAAATCAGGTTCTGAAGGAAAGGACGTTTCCAGCAATGAAATTGTACGCCCACGGGTACCTCTGGAAGCATGTCTGGCTAACTTCTC AGCTCCGGAGGAGATACATGACTTTTACAGCACTGCTTTGAGGGCTAAGACCATTGCTATAAAGAAGGCTGGGCTAACTTCATTTCCTGATTATTTGGTA TTACACATGCGCAAATTTGTTATGGAGGAGGGATGGGTTCCCAAAAAGCTAGATGTCTATATAGACGTTCCTGACATCATAGATATAAGTCACATGAGAA GCAAGGGCCTCCAACCTGGGGAAGAGATTTTGCCAGACGGTGGTATGCCTTCTCCTAGAGCTGCTCTGATTAAACTTAGGCTCTGTAACATTTTAGATGG ACATCTGAATAGGAGGCCCGAGTCTGAGGCAAAATCAAATGAAGTTGTGGCCAATGAAGATATTGTTGTTCAGCTGATGTCAATGGGATTTGATGTTGTT CGTTGCCAAAAGGCTGCAATAAACACCTCAAACGCAGGGATAGAAGAGGCAATGAACTGGTTACTTTCTCATATGGATGACCCAGATATAGATGCTCCAA TTTCCCAAGATGTTGGTTCATTAAATTTTCAGGATGGTGACATTGAGAAAGCTACGGATTGGATATTCAACAATCCTGGAGCCTCTGGGCCATCTGACAT GGATACAACTAGTTCAAGCAGTAGAGCTGCGGGGGATAATGTTGGACTAGCGGATGGAGGAGGAATGTCACACATTGGAACCTCGACGCAGTGTGGACAT TATGTTGCTCACATCCGTAAGGAAGGAAGATGGGTGATTTTCAACGACACAAAGGTAGGAGTTTCTGTAAACCCGCCCAAGGACATGGGCTACTTGTACT TCTTCGAGAGGCTGGAAGGGTAA
AA sequence Show only first row Show all	>Lus10038564 pacid=23143038 polypeptide=Lus10038564 locus=Lus10038564.g ID=Lus10038564.BGIv1.0 annot-version=v1.0 MTETWLIAAAITVGLEEEEKLGSLVTKKSGFSCLTVALSLLNVLLLFLIFCFYASVALIAAKQPTPDVIMHKIRRSEGGLFIDMNTFLAFGKDCVAWNYE KTGNPVYLHIKQTRKSIPEDRPSKKPTLLAIGIEGGFDNNDAEYDESYSIVVLPEYATSPFPSVELPEKVRVAVDAVLMAEGAERREQLAAWTADTKNVS SYAMNLKQIDNGVIVPPSGWKCIKCDKRDNLWLNLTDGMILCGRRNWDGTGGNNHAIEHYKETGHPLAVKLGTITSDLEAADVYSYPEDDSVLDPLLAQH LSFFGIDFSSLKKTEMTTAERELDQNINFDWNRIQESGQDLEPIFGPGYTGLINLGNSCYMAATMQVVFSTQSFCTRYYKNQSLKLAFEMAPADPTVDLN MQLTKLGHGLLSGKYSVPATEIDDVAESVTSTSTKHEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFLDQVERGNVSRPEADPSRSFKFGIEERIQC SSGKVTYNQRHDYILSLNIPLQEATNREEFDASLKLKAKSGSEGKDVSSNEIVRPRVPLEACLANFSAPEEIHDFYSTALRAKTIAIKKAGLTSFPDYLV LHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEEILPDGGMPSPRAALIKLRLCNILDGHLNRRPESEAKSNEVVANEDIVVQLMSMGFDVV RCQKAAINTSNAGIEEAMNWLLSHMDDPDIDAPISQDVGSLNFQDGDIEKATDWIFNNPGASGPSDMDTTSSSSRAAGDNVGLADGGGMSHIGTSTQCGH YVAHIRKEGRWVIFNDTKVGVSVNPPKDMGYLYFFERLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	0	1
AT4G24840			unknown protein		Lus10009908 [exp]	1.0	0.9410
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	1.4	0.9298
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	1.7	0.9294
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	2.2	0.9058
AT1G12470			zinc ion binding (.1)		Lus10033725 [exp]	4.0	0.9113
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	5.5	0.8936
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	10.7	0.8597
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013803 [exp]	11.1	0.8549
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	11.5	0.8536
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	11.6	0.8732

Compare expression of checked genes

Lus10038564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.