Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27350 355 / 2e-124 Protein of unknown function (DUF1223) (.1) AT5G54240 353 / 1e-123 Protein of unknown function (DUF1223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G126300 [exp] 411 / 1e-146 AT5G54240 392 / 1e-138 Protein of unknown function (DUF1223) (.1) Potri.001G408001 [exp] 295 / 3e-102 AT5G54240 290 / 3e-100 Protein of unknown function (DUF1223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF06764 [flax] [poplar] DUF1223 Protein of unknown function (DUF1223)
Representative CDS sequence Show only first row Show all	>Lus10038565 pacid=23143088 polypeptide=Lus10038565 locus=Lus10038565.g ID=Lus10038565.BGIv1.0 annot-version=v1.0 ATGGCCCCGCGTCTGCTAGCATGCTTCCGCTTCAACAAGCCCTCTTCTCCTTCCTCCGCTTCCTTCTCTTCCCAGACATTGGACGCCTCCGCCGAGGAGA AGCGCCGTGCGGGTCCCGTCCTCGTCGAGCTTTTCTCCTCCCAGGGATGCGCCACCTCCCCGCAGGCTGACCTGCTTCTTTCAAGGCTGGGCAGAGGAGA TTTCGCCCTCGAATCTCCCGTCATCGTCCTCTCTTTCCACGTCGATTACTGGGACCACCTCGGATGGAAGGATCCTTACGCCTCCAGCTTGTGGACGGTT CGGCAGAAGGATTACGTCCAATCCTTGTCCCTTGACACCATGTTTACCCCTCAGGTCGTCGTTCAAGGAAGGTCTCACTGTGTTGGCAATGAGGAAGAGT CTTTGCTTTCTTCTATCATGTCTGCTCCCAGATTCCAATCTCCTTCTTTTCAGGCGACATTTCAGAAGCCATCACCGGACACTCTTCAGGTGTCATTGTC AGGACCGCTGAGGAGTAAGATTGATGGGCAAGGGGTGAATATTATGGTGGCGCTGTACGAGAGTGGAATGGTGACTGACTGCCCTAGAGGAGAGAACAAA GATCGGGTTCTATCGAATGACTATGTGGTGAGGAGGCTTGAGAAGCTCACAACGGTGAAGGACATCTCTCCCAAGAAAGTGGTATCAGGGACAGTTTGTT TCCCCTTGTGGGAAGGCTTCAATAGCAGCAGTAAGTGTGGCATGGCCGTCTTTCTTCAAAACACGCAGCACCAAATTTTCGGTTCTCAGAACTTTCAGTT GCCGGATTCCATATGA
AA sequence Show only first row Show all	>Lus10038565 pacid=23143088 polypeptide=Lus10038565 locus=Lus10038565.g ID=Lus10038565.BGIv1.0 annot-version=v1.0 MAPRLLACFRFNKPSSPSSASFSSQTLDASAEEKRRAGPVLVELFSSQGCATSPQADLLLSRLGRGDFALESPVIVLSFHVDYWDHLGWKDPYASSLWTV RQKDYVQSLSLDTMFTPQVVVQGRSHCVGNEEESLLSSIMSAPRFQSPSFQATFQKPSPDTLQVSLSGPLRSKIDGQGVNIMVALYESGMVTDCPRGENK DRVLSNDYVVRRLEKLTTVKDISPKKVVSGTVCFPLWEGFNSSSKCGMAVFLQNTQHQIFGSQNFQLPDSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	0	1
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	1.0	0.9851
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	2.0	0.9731
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	2.6	0.9589
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	2.8	0.9694
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	3.2	0.9684
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	3.5	0.9713
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	3.5	0.9507
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	4.5	0.9550
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	4.7	0.9513
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	6.3	0.9386

Compare expression of checked genes

Lus10038565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.