Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32280 218 / 1e-73 Protein of unknown function (DUF1218) (.1) AT4G21310 215 / 1e-72 Protein of unknown function (DUF1218) (.1) AT1G11500 117 / 8e-34 Protein of unknown function (DUF1218) (.1) AT1G05291 92 / 9e-24 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039706 [exp] 209 / 5e-70 AT2G32280 222 / 4e-75 Protein of unknown function (DUF1218) (.1) Lus10018495 [exp] 207 / 3e-69 AT2G32280 221 / 6e-75 Protein of unknown function (DUF1218) (.1) Lus10018386 [exp] 201 / 6e-67 AT4G21310 252 / 5e-87 Protein of unknown function (DUF1218) (.1) Lus10007626 [exp] 201 / 9e-67 AT4G21310 252 / 6e-87 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G040900 [exp] 243 / 1e-83 AT2G32280 240 / 2e-82 Protein of unknown function (DUF1218) (.1) Potri.007G119600 [exp] 240 / 3e-82 AT2G32280 227 / 3e-77 Protein of unknown function (DUF1218) (.1) Potri.011G031500 [exp] 213 / 2e-71 AT4G21310 258 / 3e-89 Protein of unknown function (DUF1218) (.1) Potri.004G031200 [exp] 205 / 3e-68 AT4G21310 226 / 1e-76 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 49 / 2e-07 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2) Potri.004G235000 [exp] 44 / 1e-05 AT1G31720 131 / 8e-39 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10038567 pacid=23143122 polypeptide=Lus10038567 locus=Lus10038567.g ID=Lus10038567.BGIv1.0 annot-version=v1.0 ATGGGCAAAATGGTTAGCCTTTTCTTCTGTATCTTGATTGTAGCACTTGACATTGCTGCCGGAATCCTTGGCTGCCAAGCAGAAGTAGCACAAAACAAGG TTAAGCATTTGAGGCTGTGGATATTTGAGTGTAGAGATCCAAGCAATGTTGCAGTGAAGCTAGGGTTAGCTGCAGCTATCCTTCTTGTTCTCTCCCATGT CATTGCAAATTTGCTTAGTGGCTGCCTTTGCATCTGCTCTCAAGACCAACTTCAGAGGGCTTCATCTCACAAGCAACTCTCTGTTGCTTCCTTCTTCTTC ACTTGGATAATATTTGGAATTGGGTTGTCAATGCTGGTGATTGGGAGTTTGGCAAACCACAAGTCAAGTGCTTCATGTGGATTCACTCACCACCATTTCT TCTCAATTGGAGGGATCTTGTGTTTTGTACATGCCCTCTTTTCCATTGCTTACTACATCTCTGCCATTGCTGTTCCTAGCGATGAAAAGTAG
AA sequence Show only first row Show all	>Lus10038567 pacid=23143122 polypeptide=Lus10038567 locus=Lus10038567.g ID=Lus10038567.BGIv1.0 annot-version=v1.0 MGKMVSLFFCILIVALDIAAGILGCQAEVAQNKVKHLRLWIFECRDPSNVAVKLGLAAAILLVLSHVIANLLSGCLCICSQDQLQRASSHKQLSVASFFF TWIIFGIGLSMLVIGSLANHKSSASCGFTHHHFFSIGGILCFVHALFSIAYYISAIAVPSDEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	0	1
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	1.4	0.7953
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	2.0	0.7485
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	7.5	0.7535
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	8.4	0.7327
					Lus10037674 [exp]	11.0	0.7279
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	13.8	0.7170
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	19.2	0.7198
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	20.9	0.6882
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031729 [exp]	27.3	0.6644
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	29.2	0.7185

Compare expression of checked genes

Lus10038567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.