Plant FIBer expression Database

Lus10038568 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54260 962 / 0 MRE11, ATMRE11 ARABIDOPSIS MEIOTIC RECOMBINATION 11, DNA repair and meiosis protein (Mre11) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G407300
[exp]
1030 / 0 AT5G54260 1054 / 0.0 ARABIDOPSIS MEIOTIC RECOMBINATION 11, DNA repair and meiosis protein (Mre11) (.1)
Potri.001G407650
[exp]
40 / 0.0006 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04152 Mre11_DNA_bind Mre11 DNA-binding presumed domain
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Lus10038568 pacid=23143033 polypeptide=Lus10038568 locus=Lus10038568.g ID=Lus10038568.BGIv1.0 annot-version=v1.0
ATGGGAGACCTGCCAAGGGAAGATATTTCCAATACACTTCGGGTTCTTGTTGCCTCAGACTGCCATCTGGGTTACATGGAGAAGGATGAAATACGGAGGC
ATGATTCTTTCCTAGCATTTGAGGAAATATGCAAAATAGCAGAGCAAAAGCAGGTTGACCTTTTGCTCCTTGGTGGCGATCTTTTTCACGAGAATAAGCC
CTCAAGAACAACATTAGTAAGGGCCATTGAGATTCTCCGTAAGCATTGTTTGAATGATCGACCAGTACAATTCCAAGTTGTCAGTGATCAGACAGTGAAT
TTTGCTAATCCATTTGGCCATGTAAACTATGAGGATCCACACTTCAATGTTGGTCTTCCAGTGTTTAGCATTCATGGAAATCATGATGACCCTGCTGGTG
TGGACAATCTTTCTGCACTTGACATCCTGTCAACTTGCAATCTTGTGAACTATTTTGGAAAAATGGTTCTTGAGGGTTCTGGGGTTGGTCAAATCACGTT
GTATCCTATCCTTGTAAAAAAGGGTTCGACGAATGTTGCGCTGTATGGCCTTGGGAACATTAGGGACGAGCGGCTGAATAGGATGTTTCAGACTCCACAT
GCGGTACAATGGATGAGGCCTGAAGTTCAAGAAGGTTGTGAGGAGTCAGACTGGTTTAATATTCTGGTACTTCATCAGAACAGAGTGAAGACAAACCCAA
AGAATGCTATAAACGAGCACTTTCTACCAAGGTTCCTGGACTTCATCGTATGGGGCCATGAACATGAATGTGTTATCGATCCTCAGGAAGTTCCAGGTAT
GGGATTTCACATCACACAACCAGGTTCTTCAGTTGCGACATCATTGATTGATGGAGAATCAAAGCCAAAGCATGTGTTGCTTCTAGAGATTAAGGAAAAT
CAATATCGCCCAACCAAGCTACCTCTGAGCACAGTGAGGCATTTTGAATATACTGAGGTCGTACTAAAGGAAGAAACTGACATTGACCCAGATGACCAAA
ATTCAATTCTTGAACATCTTGACAAAGTGGTCAGTACTATGATAGAAAAATCAAGTCGAAATGTCATTAGCAGGTCAGAGTTGAAGCTTCCGCTAGTCAG
AGTGAAGGTGGATTACTCAGGCTATATGACAATAAATCCTCAGCGATTTGGCCAGAAGTATGTAGGAAAGGTTGCTAATCCTCAAGATATTCTTATATTC
TCAAAGACTTCCAAGAAGGGTCAAAGTGATGCTGGGATTAGTGATTGTGAGCGCCTTCGCCCGGATGAATTAAACCAACAAAACATCGAGGCTCTAGTAG
CTGAAAGTAATTTGAAAATGGAGATCCTTCCAGTCAATGACTTGGATGTTGCCTTGCATAATTTTGTTAATAAGGATGACAAGATGGCTTTCTATACGTG
CGTGCAACAAAATCTCCAAGAGACACGTAGTAAACTTGCAAAGGATACAGAGACAACAAAGTTGGAAGAGGAAGACCTAATTCTTAAAGTTGGAGAATGC
TTAGAGGCAAGACGCTCTAGATTTTATTGCAGAATTTCTAATTGCTTCATTACTGGACGTGTAAAGGCAAGGTCTCAGCAGCCACTTGATAATCTTATGT
CCACAACTAGTGCACAGTCGACGGAGGATTTCAGAAGTACAATTGCTCCAGGAATCGGAAGCACGGTTTCTTTTAGTGATGATGAAGAAACTACACAGGT
ATCTGGGGCAAGGTCTACTGCCAGGGGCAGGAAAGGGAATACTCGTAATGCTACAGAAGTCGGTAAGAGTAAAACTTCTGCAAGAGGAAGAGGTAAAGGC
AGAGGTTCAAGTAACATGAAGCAGACAACTCTTGATGCTTCACTAGGTTTTCGGCAGTCTCAAAGATCGGCATCAGCTGCAGTGAGGAACATAGCGGATG
AAGATGTGGATTCCGCTTCAAGTGAAGGGGGACATGGAATTGATGAGGTCAATGATAGTGAGGAGGAGGCTGAAAGCGTCAAAGGAAAAGGGCGAAAAAG
AGCAGCAGCCCCAAGGGGAAGGGGTAGAGGTACAGGGACCACAACAGCAAAACGAGGAAGGAAAACGGAGAGCCCAGGGATCAAGAGAATGCTAACGAGC
ACGGATGATGACGATGATGATGAAAATGACCTGGCTAAGCTATTGAACAAGACTACAACACGGGTAACGAGGAATTATGGTGCTTTGAGAAGGTGA
AA sequence
>Lus10038568 pacid=23143033 polypeptide=Lus10038568 locus=Lus10038568.g ID=Lus10038568.BGIv1.0 annot-version=v1.0
MGDLPREDISNTLRVLVASDCHLGYMEKDEIRRHDSFLAFEEICKIAEQKQVDLLLLGGDLFHENKPSRTTLVRAIEILRKHCLNDRPVQFQVVSDQTVN
FANPFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSALDILSTCNLVNYFGKMVLEGSGVGQITLYPILVKKGSTNVALYGLGNIRDERLNRMFQTPH
AVQWMRPEVQEGCEESDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFIVWGHEHECVIDPQEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKEN
QYRPTKLPLSTVRHFEYTEVVLKEETDIDPDDQNSILEHLDKVVSTMIEKSSRNVISRSELKLPLVRVKVDYSGYMTINPQRFGQKYVGKVANPQDILIF
SKTSKKGQSDAGISDCERLRPDELNQQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKMAFYTCVQQNLQETRSKLAKDTETTKLEEEDLILKVGEC
LEARRSRFYCRISNCFITGRVKARSQQPLDNLMSTTSAQSTEDFRSTIAPGIGSTVSFSDDEETTQVSGARSTARGRKGNTRNATEVGKSKTSARGRGKG
RGSSNMKQTTLDASLGFRQSQRSASAAVRNIADEDVDSASSEGGHGIDEVNDSEEEAESVKGKGRKRAAAPRGRGRGTGTTTAKRGRKTESPGIKRMLTS
TDDDDDDENDLAKLLNKTTTRVTRNYGALRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54260 MRE11, ATMRE11 ARABIDOPSIS MEIOTIC RECOMBINAT... Lus10038568
[exp]
0 1
AT1G48410 AGO1 ARGONAUTE 1, Stabilizer of iro... Lus10017983
[exp]
1.4 0.8661
AT4G26140 BGAL12 beta-galactosidase 12 (.1.2) Lus10040557
[exp]
11.2 0.8559
AT1G17680 tetratricopeptide repeat (TPR)... Lus10042212
[exp]
14.4 0.8372
AT1G60140 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 1... Lus10030853
[exp]
15.8 0.8529
AT1G17130 Family of unknown function (DU... Lus10013706
[exp]
16.0 0.8032
AT5G22030 UBP8 ubiquitin-specific protease 8 ... Lus10013599
[exp]
17.5 0.8361
AT1G73170 P-loop containing nucleoside t... Lus10012291
[exp]
17.5 0.8364
AT4G10930 unknown protein Lus10032402
[exp]
19.8 0.8261
AT1G80000 CASC3/Barentsz eIF4AIII bindin... Lus10011468
[exp]
22.4 0.8103
AT5G27860 unknown protein Lus10020665
[exp]
22.8 0.7909

Lus10038568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.