Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54280 1296 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT3G19960 1114 / 0 ATM1, ATATM myosin 1 (.1.2) AT1G50360 1101 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27370 1045 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43900 583 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G08730 567 / 9e-179 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G04160 566 / 1e-178 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT1G54560 566 / 1e-178 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT2G20290 562 / 2e-177 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G17580 560 / 3e-176 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037876 [exp] 2218 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10017377 [exp] 1105 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10013443 [exp] 1097 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 964 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10040996 [exp] 710 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10022850 [exp] 586 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 566 / 2e-180 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10014753 [exp] 550 / 4e-178 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023696 [exp] 559 / 1e-171 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G407000 [exp] 1506 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.011G126800 [exp] 1477 / 0 AT5G54280 1519 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.007G074800 [exp] 1135 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.005G089200 [exp] 1130 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.006G220000 [exp] 575 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.013G043900 [exp] 570 / 3e-180 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 566 / 1e-178 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 565 / 3e-178 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 565 / 3e-178 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 563 / 4e-177 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain)
Representative CDS sequence Show only first row Show all	>Lus10038576 pacid=23143106 polypeptide=Lus10038576 locus=Lus10038576.g ID=Lus10038576.BGIv1.0 annot-version=v1.0 ATGATGCTATCCCCAACTACTGTGACGAGGAGCTCCCTTGAGGAGATGCTAGAGTCCTTGAGGCAGCGAGATGAGGCATTGGAGAAAGCCAAAGACCTTC CCCCAGCTTTGCCGTCTCGTCCCACCTCACGGGCAAGGCTTCCATCTGCGCGCCTGTCATTGCCTACGGACTTCAAAGTTGGCGCAAATGGCAAATTCGA AGGCAAGGTTGAGAGTGTCTTGGAAAGCAAGGTAGTAGAGAGTGTTGTAGTGAGCAAATTATTGAGCGTAGTTAACCAAGATGATGAAACCAAAAGGAAG AAGGAGCTGGACTGCAGAATAGGAAGCTTTGGAAGCAGGAAAATGAGGAAAGTTCTTGACTCCGTTGACTCAAATCCGTATGCTAAAGAAATGAATTCCA CCGAATCAATGCCAAACGGTAACGAGATGGAATGCGAAGACAACATTGGCTACTTTATTAGGAAGAAACTAAGGGTTTGGTGTGAACTGTCAAATGGAGT CTGGGCCTCTGGAACGATACAATCAACTTCAGATAATGAAACATCTGTTGAACTTGCAGATGGAAATGTTGTAAATGTCCCAGCAGTGCAGCTTTTACCT GCAAACCCGGATATTCTTGATGGTGTGGATGATCTTATGCAGCTTAGTTTTGTAAATGAGCCATCAGTTCTTCACAATCTTAAGTACAGATATACTGAAG ATATGATCTATAGTAAAGCGGGGCCAGTTTTGATTGCTGTCAACCCATTCAAAGATGTCCCACTGTATGGGAAAAAAGCTATTGCTGCTTATAAACAGAA GGATATGGCCTGGCCACATGTTTATGCTCTAGCGGATGCTGCTTATGACCAGATGATGAGAGATGAGAAGAATCAATCTATCATCATAAGTGGGGAAAGT GGAGCAGGTAAGACTGAGACAGCCAAGTATGCAATGCAATATTTGGCTGCTCTTGGTGGCGGCAGTGGTGGTATGGAGTTAGAAATGCTTCAAACTAATT GTGTTCTTGAAGCATTTGGGAATGCTAAAACCTTGCGAAACAAAAACTCTAGTAGATTTGGTAAATTGATTGAAATTCATTTTACCACATTAGGAAAGAT ATGTGGCGCTAAAATTCAAACATTCTTCTGTGAGCAGTCAAGAGTGGTTCAGGTGGGCGATGGTGAAAGATCATATCATGTCTTTTATCAACTTTGTTCT GGGGCACCATCACTCCTGAGAGAGAAATTAAATCTTAAAGCCGCTGCAGAGTACAAGTATCTTAATCAGAGTGAGTGTTTTGAAATTGATGGTGTTGATG ATGCAGTGAAGTTTCATAAGCTTCAGGATGCCTTTGAAAGCTTGAAAATTCCCAAAGAAGATCAAGAACGCATCTTTGAAATTCTTGCTGCAATATTGTG GCTAGGAAACATTACATTCCAAACTGTTGACAATGAGAATCACGTGGAGGTATTGCCAGATGAAGCTCTAGCGAATGCTTCCAAGCTAATGAACTGCACT GCACTGGGACTGATGGTCGCATTATCAACCCATAAAATCCGAGCAGGGAATGATAATATCTCTAAGAAAAAAACACTGCAGCAGGCAATTGATACAAGAG ATGCCTTGGTCAAGTTTATGTATGGGAACTTGTTTGATTGGCTTATGGAACAAATCAACAAGTTGCTTGACGGACGCCAAAATACTTGGAGGTCCATAAA TATCCTTGATATTTATGGATTTGAGTCCTTTAAGAAGAACAGCTTTGAACAATTCTGTATCAATTATGCGAATGAGAGGCTGCAACAACATTTCAACAGA CACTTACTGAAACTAGAGCAAGAGGAGTACGAAGAAGATGGAATTGATTGGACGAAAGTTGATTTTGAGGACAACCAAGACTGTTTGGATCTTTTTGAAA AGAAACCTATAGGGTTGTTGTCTTTGCTCGACGAGGAATCAAATTTCCCTAATTCCACTGATTTGACGTTGGTCAATAAGCTTAATAAGCACTTGAATGG GAATCCTTGCTATAAAGGTCAACGAGGCCGAGCTTTTGGTGTACGCCATTATGCAGGGGAGGTTGTGTATGATACTAATGGCTTCATGGAGAAGAACCGG GATCCACTCCATTCTGACTTTATCCAACTACTATCTTCAAGCAGCTGCAAAATTCTGCAAGCGCTTGCTACTGAGAAGCCTAATCAAACTCCCAACTCAC TGAAAAGCTCAGTATCACATCTAGGGAGACAGGAATCCTCAACACAGAGTGTTGGAACTAAGTTCAAGGGTCAACTCTTTAAACTAATGAATCAATTGGA GAACACAGCGCCACACTTTATTCGCTGCATAAAGCCAAACAGAAAGCAGGTTCCTGGTGCGTATGAGGAGGATCTTGTTCTACAACAACTCCTTTGTTGC GGAATTATGGAGGTGATGAGGATTGCAAGAGCTGGATATCCTTCTCGAATGACGCATCAAGAATTTTCTGGAAGATATGGATTGCTTCTTCCTGAAACAA GTGAATGTTTGGATCCATTGAGCATATCTGTAGCTATCCTTAAGCAGTTCAATGTACTGTCTGAAATGTATCAAGTTGGCTACACCAAAGTTCATCTTCG TACGGCCCAGATTGCCAGATTAGAGGACCAGAGGACAAAAGCTCTGCAAGGCATCATTACTCTCCAGAATTGCTTTCGCGGTTCCAAGGCCCGCCGTCAT TTCCATGAACTCAAAGATGGTGCAACGACTTTACAATCATTTATTCGTGGAGAAAATGCGAGACGGGAATACGAGTCTATGTCCAAGACATGCGATGTCG ATACTCTACCAGTGGTTGACGAGCAGCTGGTTGCCATAATATGTTTGCAATCAGGTGATATTACAGTGATGCCACAAGAGCAGATTGAGGAGCTACAGAC CACATTATTGGCAGAGCTCCAGAAGAGGGTTCTCATGGCAGAACAAACTTTGGTACACAAGGATGAGGAAAACGCAGCACTAAAGGAACAGGTACATGAC TTTGAGAAAAGGTGGTCTGATTATGAATCAAGGATGAAAACTATGGAAGAGACATGGCAAATGCAGATGACATCATTGCAGGCAAGTCTTGCTGCGGCCA GGAAGTGTGCTGCCGCGGATAACCTGATTATTCCACATGGTAAGCTGGAATCACCTCACTACTACGACTCAGAGGATTATCCGTCAAATGACTCTCGGAC TCCCGGTGGAAGCACACCAAGAAATGTACCGAATTCCATGCCTGATCTTAGAGTTGCTAAAGAGCCTAATGGCGCTAGAAATCCAGTAACGACATTACTA AGGGAATTTGAGAACCAGACCCAGAATTTCGAAAGCGACTGTAAGGCCATAGTTGATGTGGGTTCAGGGAACTCATCAGGCTCTATAATGAGCCCCGATG AAGCACTTAGAAGGCTGAGAAACCGGTTCGAGATGTGGAAGAAGAACTACAAGACAAAACTGCGGGAGGCAAAAACAAGACTGCAGAAACTCGGCCAGGG AGAGAACCACAAGAACCGCAGGGGATGGTGGGCCAAAATCGGTGCAAAGATGTTGACATAA
AA sequence Show only first row Show all	>Lus10038576 pacid=23143106 polypeptide=Lus10038576 locus=Lus10038576.g ID=Lus10038576.BGIv1.0 annot-version=v1.0 MMLSPTTVTRSSLEEMLESLRQRDEALEKAKDLPPALPSRPTSRARLPSARLSLPTDFKVGANGKFEGKVESVLESKVVESVVVSKLLSVVNQDDETKRK KELDCRIGSFGSRKMRKVLDSVDSNPYAKEMNSTESMPNGNEMECEDNIGYFIRKKLRVWCELSNGVWASGTIQSTSDNETSVELADGNVVNVPAVQLLP ANPDILDGVDDLMQLSFVNEPSVLHNLKYRYTEDMIYSKAGPVLIAVNPFKDVPLYGKKAIAAYKQKDMAWPHVYALADAAYDQMMRDEKNQSIIISGES GAGKTETAKYAMQYLAALGGGSGGMELEMLQTNCVLEAFGNAKTLRNKNSSRFGKLIEIHFTTLGKICGAKIQTFFCEQSRVVQVGDGERSYHVFYQLCS GAPSLLREKLNLKAAAEYKYLNQSECFEIDGVDDAVKFHKLQDAFESLKIPKEDQERIFEILAAILWLGNITFQTVDNENHVEVLPDEALANASKLMNCT ALGLMVALSTHKIRAGNDNISKKKTLQQAIDTRDALVKFMYGNLFDWLMEQINKLLDGRQNTWRSINILDIYGFESFKKNSFEQFCINYANERLQQHFNR HLLKLEQEEYEEDGIDWTKVDFEDNQDCLDLFEKKPIGLLSLLDEESNFPNSTDLTLVNKLNKHLNGNPCYKGQRGRAFGVRHYAGEVVYDTNGFMEKNR DPLHSDFIQLLSSSSCKILQALATEKPNQTPNSLKSSVSHLGRQESSTQSVGTKFKGQLFKLMNQLENTAPHFIRCIKPNRKQVPGAYEEDLVLQQLLCC GIMEVMRIARAGYPSRMTHQEFSGRYGLLLPETSECLDPLSISVAILKQFNVLSEMYQVGYTKVHLRTAQIARLEDQRTKALQGIITLQNCFRGSKARRH FHELKDGATTLQSFIRGENARREYESMSKTCDVDTLPVVDEQLVAIICLQSGDITVMPQEQIEELQTTLLAELQKRVLMAEQTLVHKDEENAALKEQVHD FEKRWSDYESRMKTMEETWQMQMTSLQASLAAARKCAAADNLIIPHGKLESPHYYDSEDYPSNDSRTPGGSTPRNVPNSMPDLRVAKEPNGARNPVTTLL REFENQTQNFESDCKAIVDVGSGNSSGSIMSPDEALRRLRNRFEMWKKNYKTKLREAKTRLQKLGQGENHKNRRGWWAKIGAKMLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10038576 [exp]	0	1
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	3.3	0.8744
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	4.4	0.8287
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	9.8	0.8707
AT5G15170		TDP1	tyrosyl-DNA phosphodiesterase ...		Lus10018371 [exp]	10.1	0.8197
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	12.0	0.8583
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	12.5	0.8551
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	13.2	0.8444
AT3G12590			unknown protein		Lus10001698 [exp]	13.5	0.8340
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	14.5	0.8146
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	15.8	0.8455

Compare expression of checked genes

Lus10038576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.