Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64020 502 / 1e-177 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT5G20680 483 / 3e-168 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT2G37720 434 / 9e-150 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 186 / 6e-54 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 176 / 5e-51 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 172 / 2e-48 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G11570 168 / 2e-47 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 160 / 4e-44 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT2G30010 158 / 5e-44 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT2G34070 157 / 8e-44 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037877 [exp] 561 / 0 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10039914 [exp] 464 / 1e-161 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10027651 [exp] 461 / 2e-160 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10034039 [exp] 185 / 2e-53 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 182 / 2e-52 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 171 / 4e-48 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10017004 [exp] 169 / 4e-48 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 169 / 4e-47 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10013929 [exp] 163 / 3e-46 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104300 [exp] 593 / 0 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G065100 [exp] 580 / 0 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.005G064875 [exp] 514 / 0 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.006G140300 [exp] 498 / 6e-175 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.002G195800 [exp] 178 / 5e-50 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.009G072800 [exp] 168 / 1e-47 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G203900 [exp] 169 / 2e-47 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.006G071500 [exp] 167 / 1e-46 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G074800 [exp] 165 / 2e-46 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.001G278300 [exp] 164 / 2e-46 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10038577 pacid=23143043 polypeptide=Lus10038577 locus=Lus10038577.g ID=Lus10038577.BGIv1.0 annot-version=v1.0 ATGATTATTCTGTGGACATGGGAGGAGAATCCCTTAGTTACAACACTGCAGTCTGCGCAAGACCAGTTTAATGTATTCTCTTCAGGTATCATTGTTAACA GACCTAGAGATGCCTCCCAATCATCTGGGTATCCTCCTGATCATTTGGAGGAAGACCATGCAGGTTCATTGGTTAAGTTTATCAATACATCAGCTCCTGG AGATGAGCAGAATAGTAGAAGTATTGTACCATCTTCAAAACTAAAAGGTAGAGTTGCTGCTGAATTAGAGTGCAATTATGCTAAAGGAAGGTGGATTGCA GACAACAGGCGACCTCTATATTCTGGGTTTCAATGTAAACAATGGTTGTCTGGAATGTGGGCATGTAGAACATTTCCTCGAACAGATTTTTCATTCGAGA AATATAGATGGCAAGCAGAGAACTGTAAAATGAATGAATATGAACAGTCAGAATTCTTAACCAGAATGCAGGACAAAACAATTGCCTTCATTGGAGATTC ACTGGGCAGACAGCAATTTCAATCTTTGATGTGTATGGCGTCAGGTGGAGAATGGAGGATGGATGTGACAGACGTGGGAGCCGAATTTGGTCTTGTGAAA GCTCCAGGAGCCAAACGCCCAGATGGTTGGGCTTATCGCTTCTCAAACACCAACACAACCATATTGTATTACTGGTCAGCCAGTCTAGCTGACCTGGTGC CTTTAAATGCGAGTGACCAACAAAGTGACGTTGCGATGCATTTGGACCATGCACCAGCGTTCATGAGACGGTACCTTGGTAGATTTGATGTGCTAGTTCT TAACACTGGGCATCACTGGAACCGAGGGAAGCTTAAAGCAAATAGGTGGGTGATGTACATAAATGGGGAGCCACTTGAAGAGAACGCACCAGTGGATATG AACATTGCCAAGAATCTTACAGTTCACAGTGTCGTAAGGTGGCTAGATTCGCAGCTTCCTTCACATCCACGTCTCAAAGTGTTTTTCAGGACCATCTCAC CAAGGCATTACCGTGGTGGGGACTGGAACACAGGAGGTAATTGCGATAATACCACTCCGATGACTAGAGGGAGCGAAACGTTAGAGGAGAAATCAATTGA CGAGGTTGTTGAGTCGGCCGTTAAGAGAACTAAGATAAAGCTGTTGGACATAACAGCCATCTCTGAGCTTAGAGACGAGGCTCACATTTCTAATTACAGT GCTAGGACCACAAATGGTGTAAGTGATTGCCTACACTGGTGCTTGCCTGGTATTCCAGACACATGGAATGAGCTCTTGGCTGCACAGGTTTAG
AA sequence Show only first row Show all	>Lus10038577 pacid=23143043 polypeptide=Lus10038577 locus=Lus10038577.g ID=Lus10038577.BGIv1.0 annot-version=v1.0 MIILWTWEENPLVTTLQSAQDQFNVFSSGIIVNRPRDASQSSGYPPDHLEEDHAGSLVKFINTSAPGDEQNSRSIVPSSKLKGRVAAELECNYAKGRWIA DNRRPLYSGFQCKQWLSGMWACRTFPRTDFSFEKYRWQAENCKMNEYEQSEFLTRMQDKTIAFIGDSLGRQQFQSLMCMASGGEWRMDVTDVGAEFGLVK APGAKRPDGWAYRFSNTNTTILYYWSASLADLVPLNASDQQSDVAMHLDHAPAFMRRYLGRFDVLVLNTGHHWNRGKLKANRWVMYINGEPLEENAPVDM NIAKNLTVHSVVRWLDSQLPSHPRLKVFFRTISPRHYRGGDWNTGGNCDNTTPMTRGSETLEEKSIDEVVESAVKRTKIKLLDITAISELRDEAHISNYS ARTTNGVSDCLHWCLPGIPDTWNELLAAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	0	1
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10021169 [exp]	1.7	0.8838
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	2.4	0.8851
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	2.6	0.9059
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	5.1	0.8526
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	6.6	0.8586
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	8.8	0.8624
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	9.2	0.8625
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	9.6	0.8722
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	13.9	0.8339
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10033016 [exp]	14.3	0.8537

Compare expression of checked genes

Lus10038577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.