Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27380 40 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037879 [exp] 127 / 8e-40 AT4G27380 49 / 3e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406900 [exp] 61 / 3e-13 AT4G27380 49 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038579 pacid=23143133 polypeptide=Lus10038579 locus=Lus10038579.g ID=Lus10038579.BGIv1.0 annot-version=v1.0 ATGGCGAAAAACAGAAGCAAGAAGAAGACCACCGGCGCTGCTTCCATGGATGTATCAGAACCTACCGTCTCAGATGTTTCTCAAGCAATGGACACGTCGG AGCCTGGAGCTTCGAGACCTACCTCTAGTGGCCTCCACAGAATACAGAAGGGAAGGCCGATGAAGAGATCGAAGAATGTTCGGAAGAAGAAGGCCCTGGC AAAGGCCGTTTCGAAGTCGGAGAAGTCTGTTGAGAAAGTTGTCAAGCATGAGAATAAGAAACAAAGAACTCTATCAGCCAAGCAGCTGTATGACTAA
AA sequence Show only first row Show all	>Lus10038579 pacid=23143133 polypeptide=Lus10038579 locus=Lus10038579.g ID=Lus10038579.BGIv1.0 annot-version=v1.0 MAKNRSKKKTTGAASMDVSEPTVSDVSQAMDTSEPGASRPTSSGLHRIQKGRPMKRSKNVRKKKALAKAVSKSEKSVEKVVKHENKKQRTLSAKQLYD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27380			unknown protein		Lus10038579 [exp]	0	1
AT4G34270			TIP41-like family protein (.1)		Lus10026859 [exp]	8.5	0.8281
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Lus10019602 [exp]	15.2	0.7902
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	19.2	0.7587
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	20.1	0.7198
AT1G05205			unknown protein		Lus10039669 [exp]	31.7	0.7834
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	31.7	0.7618
AT2G45860			unknown protein		Lus10037857 [exp]	36.9	0.7455
AT1G26660			Prefoldin chaperone subunit fa...		Lus10030428 [exp]	41.4	0.7292
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	44.3	0.7462
AT1G02160			Cox19 family protein (CHCH mot...		Lus10024637 [exp]	51.6	0.7430

Compare expression of checked genes

Lus10038579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.