Plant FIBer expression Database

Lus10038580 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20130 118 / 2e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037880
[exp]
264 / 7e-91 AT5G20130 135 / 3e-40 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G013500
[exp]
145 / 5e-44 AT5G20130 147 / 9e-45 unknown protein
Potri.006G010600
[exp]
74 / 4e-17 AT5G20130 93 / 2e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10038580 pacid=23143083 polypeptide=Lus10038580 locus=Lus10038580.g ID=Lus10038580.BGIv1.0 annot-version=v1.0
ATGGCGCAGGTAGTTAACCTAACCCCTCTGCGTTCCTCGGCGGTTCCGTCAGCCTCAGACGGCCTCTTCCGCCTCCGATATCTCCCCAAAGGCACGAGGA
GTTGCAAAAGCAGGATCAATTGCCTATTCTCAAAAGGCGGAAGAGAGGAACAAGCGAAGAAGGCATTAGAGAGCGCGTTAGGAGGGAAGAAGAGCGAGTT
CGAGAAGTGGGACAAGGAAATCAAGAAGAGAGAGGAAGCCATGGGAGGGGATTCCAGTGGTGGTGGTGGAGGCGGCGGCGGTTGGTTCGGGTCAGGCGGG
CCGTTTGGCGGAGGAGGCGAGAATTTCTGGCCGGAAGCTCAGCAAGCGTGTCTAGCCTTATTAGGGATGGTAGGTATCTACCTGGTGCTTGCCAAAGGAG
AAGTCATGTTCGCGGTTGTCTGCAACCCTCTGCTCCGCACTCTAAGAGGAACCAGAGACGGGTTGACTTTCATTTCCTCCAAGTTTGCCGGCGGCCATGC
TTATGTCGGCGATTCCTCCAGCAAAGAAGCTTTCGATGTTCGCGTCTCTGCCAAGGACAGAGTAGTGAAGAAATGGGGAACCGACTGA
AA sequence
>Lus10038580 pacid=23143083 polypeptide=Lus10038580 locus=Lus10038580.g ID=Lus10038580.BGIv1.0 annot-version=v1.0
MAQVVNLTPLRSSAVPSASDGLFRLRYLPKGTRSCKSRINCLFSKGGREEQAKKALESALGGKKSEFEKWDKEIKKREEAMGGDSSGGGGGGGGWFGSGG
PFGGGGENFWPEAQQACLALLGMVGIYLVLAKGEVMFAVVCNPLLRTLRGTRDGLTFISSKFAGGHAYVGDSSSKEAFDVRVSAKDRVVKKWGTD

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20130 unknown protein Lus10038580
[exp]
0 1
AT5G20130 unknown protein Lus10037880
[exp]
1.0 0.8357
AT5G55130 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-fact... Lus10000697
[exp]
4.0 0.7780
AT5G52810 NAD(P)-binding Rossmann-fold s... Lus10039290
[exp]
5.1 0.8084
AT1G50300 TAF15 TBP-associated factor 15 (.1) Lus10030555
[exp]
15.7 0.7671
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Lus10017281
[exp]
18.8 0.7617
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10012580
[exp]
19.9 0.7746
AT5G62200 Embryo-specific protein 3, (AT... Lus10027387
[exp]
20.2 0.8031
AT1G54310 S-adenosyl-L-methionine-depend... Lus10001763
[exp]
25.4 0.7153
AT1G78310 VQ motif-containing protein (.... Lus10036479
[exp]
26.7 0.7582
AT1G16350 Aldolase-type TIM barrel famil... Lus10000276
[exp]
27.3 0.7146

Lus10038580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.