Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54290 371 / 4e-127 CcdA cytochrome c biogenesis protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037881 [exp] 526 / 0 AT5G54290 381 / 6e-131 cytochrome c biogenesis protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406700 [exp] 426 / 1e-148 AT5G54290 433 / 1e-152 cytochrome c biogenesis protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF02683 [flax] [poplar] DsbD Cytochrome C biogenesis protein transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10038581 pacid=23143001 polypeptide=Lus10038581 locus=Lus10038581.g ID=Lus10038581.BGIv1.0 annot-version=v1.0 ATGAGCTTCCTCTTGACCCGCTGTGTTAGCTGTTGCATTGCTGCCGATAAGAAAATCAATCGAGGGAAGAGAATCGCCGCGATCAAAGTGAGTGGAAGTT CTGCTGCAGATGAGTGTGCTCGCTCTGAGGTTGTTACTTTGTCGAAGAATTACAGTAGACATAGCTTTCGTGACAAAGCCATTGCCAGTTCCTTTGCAGT TGCAAATTTGGTTGCAATAGGCAATGCCAGGGCTGTGTCCTCAGATAAATTATTGGAAGATGCTGCCTTCCTTTATACTCTAGCTGAGGGAAATATTGGG GATTGGTTTGGAGGATTCTTGTATTCTGCTAGTCAACAGGCTAATGAGGCAGTTCAGGGCCAATTAACAGCACTTAGCTTCACAAGTTTGGCTGTTATTT TTGGGGCAGGACTTGTAACTAGCCTTTCTCCTTGTACACTGAGTGTTCTACCTCTGACCCTTGGTTACATTGGAGCATTTGGCTCTGGCAAAAGTAGATC GCAGATTGTGGGGGACTCTGTCGCATTCTCCTTAGGGTTGGCATCTACGCTTGCTCTTTTAGGCATAGCAGCCTCATTTGCTGGAAAAGCATATGGGCAG ATAGGGCAAGGGTTGCCCTTAGCAGCTTCCGGGTTGGCTATTGTTATGGGTCTCAGTCTCCTGGAGGTTATTGAGGTACAGCTTCCTTCCTTTTTTGACA ACTACGACCCTCGTGCTGCTGCTGCTAATTTTCCTTCAAGCGTACAAGCATACCTAGCTGGGCTTACATTTGCATTGGCTGCATCACCTTGTAGTACACC AGTGCTGGCAACCTTGTTAGGATATGTAGCCACATCTAAGGATCCAATAGTCGGAGGCAGTCTACTTTTGACATACACAACTGGCTATGTAGCTCCTCTT CTTCTTGCTGCTTCTTTTGCTGGGGCATTGCAGGCTGTTCCCGATTTCAATGGTTATGTAGAGGTGGCATCCTACAGATCCAGTGTCAGGAAGCAGCAGC AAGGGCGTAAGAGCAGCACATATGGGATTGTGCAAGAGAGATTGAGGGATCATCCTTCAACCTCATTTTCCCTAAAGGTCAAAACCAAGCATGAAGATAG CGAAGCAGGGACGCTGATGAAATTTGAAGCAGAGCAGGAGGAGGAGAAAAGGACGATGAGCTTGCAGAATGAGACATCATCAGCCATATGCCTACCGTTG GCACGCCTGAAGAAGGCACCGACCGGTGAGCGAAAAGTAAAGGATTCTGCTTTAGCAGAAACTGGAAAGAAACGGATCTTCATCCGTTCCCGATTGTAA
AA sequence Show only first row Show all	>Lus10038581 pacid=23143001 polypeptide=Lus10038581 locus=Lus10038581.g ID=Lus10038581.BGIv1.0 annot-version=v1.0 MSFLLTRCVSCCIAADKKINRGKRIAAIKVSGSSAADECARSEVVTLSKNYSRHSFRDKAIASSFAVANLVAIGNARAVSSDKLLEDAAFLYTLAEGNIG DWFGGFLYSASQQANEAVQGQLTALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRSQIVGDSVAFSLGLASTLALLGIAASFAGKAYGQ IGQGLPLAASGLAIVMGLSLLEVIEVQLPSFFDNYDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLTYTTGYVAPL LLAASFAGALQAVPDFNGYVEVASYRSSVRKQQQGRKSSTYGIVQERLRDHPSTSFSLKVKTKHEDSEAGTLMKFEAEQEEEKRTMSLQNETSSAICLPL ARLKKAPTGERKVKDSALAETGKKRIFIRSRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10038581 [exp]	0	1
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10035187 [exp]	3.3	0.8936
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	14.0	0.8896
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	15.0	0.8856
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	18.9	0.8530
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	21.1	0.8891
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	24.1	0.8884
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	24.5	0.8353
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	28.8	0.8703
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	32.0	0.8883
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	32.2	0.8874

Compare expression of checked genes

Lus10038581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.