Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54310 439 / 3e-151 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 186 / 6e-56 AGD15 ARF-GAP domain 15 (.1) AT4G05330 111 / 3e-27 AGD13 ARF-GAP domain 13 (.1) AT4G21160 105 / 4e-25 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 105 / 1e-24 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G13300 101 / 1e-22 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G61980 98 / 1e-21 AGD1 ARF-GAP domain 1 (.1) AT3G53710 97 / 1e-21 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 96 / 4e-21 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT5G46750 95 / 6e-21 AGD9, AGD8 ARF-GAP domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037882 [exp] 589 / 0 AT5G54310 344 / 4e-114 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 244 / 1e-75 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 242 / 1e-74 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 188 / 2e-56 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10016724 [exp] 101 / 1e-22 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 101 / 2e-22 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10002760 [exp] 100 / 2e-22 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10000903 [exp] 99 / 2e-22 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10024165 [exp] 100 / 3e-22 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127000 [exp] 462 / 5e-160 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 451 / 8e-155 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 342 / 3e-113 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 336 / 7e-111 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 202 / 3e-62 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.003G198301 [exp] 110 / 4e-26 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 110 / 4e-26 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G026400 [exp] 105 / 1e-25 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 106 / 2e-25 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 103 / 3e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10038582 pacid=23143064 polypeptide=Lus10038582 locus=Lus10038582.g ID=Lus10038582.BGIv1.0 annot-version=v1.0 ATGATGATCTTGGAAGGCCTTCTCAAGTTACCCGAGAATAGGGAATGTGCAGACTGCAAGTCAAAGGGTCCAAGATGGGCAAGTGTGAACTTGGGTATAT TTATATGCATGCAGTGTTCTGGGATCCACAGAAGTCTTGGGGTACACATATCAAAGGTTCGATCTGCAACCCTTGACACATGGCTTCCAGAGCAGGTTGC ATTTATTCAATCCATGGGAAATGAGAAGGCAAATGGCTACTGGGAAGCTGAACTGCCCCCAAACTATGACAGAGTTGGAATTGAGAATTTTATTCGTGCA AAGTATGATGATAAGAGGTGGATACCTAAGGATGGGAGCACAAAGTCTCCTCCCAGAAGCCATGCTGAAATCTCTTTGGAAAGGAAGAAGCCGGTGGAGA GAAGTAGTCATGGGCACAGCAGCAGCTCCGAAAATCTATTCGAGGGAAGGAGGAGTGCACAGGCACAAAACTCAAAACAACGAGTTCCTGCTGCAAGGAT AAGTATTCCTGTGCCTCCAAAAGGATCTGAGCAGATTACCCCTCCTAAGGTTGTCATGGAAGCTGAACCTGTCATAGAGCCATCTGAATCAACAAAGAAG GCAGTGGATGCTGCTCCATCTGTCACTCAACCGAAGGTTGATTATGCCACTGACCTTTTCAACATGCTGTCGTTAGATGGTCCGACTGAGAATGGCTCAG AGCTAGCTGCTAGTGATGATAATGGTTGGGCCGGTTTTCAAACTGCTGGTGTTGCCGCCACTGGGGAAGCTTCAACGATTGAGAAAGCTGATCCACCAAA AACAGTAGAGAGGAATGATACACGTTCGACCACTTCCATCGACGACTTATTTAAGGATGAACCTTCTACAATATCTCCTGCTGTCTCCCAGAAACCAGAG AAAGATGTTAAAAATGACATAATGAGTCTTTTCGAGAAGTCCAATATGGTCTCTCCGTTTGCTATGCATCAACAACAAATTGCAATGCTAGCACAGCAGC AATCACTTCTGATGGCTGCTGCAGCAAAAGCAGGTGGTGCTTCTGTTTCTGCCAACGGTCAACAAGCAGGGCCCAATGGTTTTAATTTGCCAGCTCAGAA TTGGCCCAACGTTGGGTACCAGATTCCTGGTTTGATGGTGCCAGTGGCGGGGCAAGCCGACCTACATAAACTTATGCAGAGTGGTAACTTAGCAACAACA CAACCGATGGGTGGCTCTGTACCATATCCAGCATCTAGCTTGTATAGCATGGGGCAAGTGACCTCCTCGGCTAACGGGGGGAACACAGGCACGGGGTCGA GTAAAGCACAATCGGCAACTCCAGTAGTAGCATCCAGCAACTCTACGCAGTCTGCAAAAGATTTTGATTTCTCGTCTTTAACTCAAGGCCTATTCACGAG GCACTGA
AA sequence Show only first row Show all	>Lus10038582 pacid=23143064 polypeptide=Lus10038582 locus=Lus10038582.g ID=Lus10038582.BGIv1.0 annot-version=v1.0 MMILEGLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANGYWEAELPPNYDRVGIENFIRA KYDDKRWIPKDGSTKSPPRSHAEISLERKKPVERSSHGHSSSSENLFEGRRSAQAQNSKQRVPAARISIPVPPKGSEQITPPKVVMEAEPVIEPSESTKK AVDAAPSVTQPKVDYATDLFNMLSLDGPTENGSELAASDDNGWAGFQTAGVAATGEASTIEKADPPKTVERNDTRSTTSIDDLFKDEPSTISPAVSQKPE KDVKNDIMSLFEKSNMVSPFAMHQQQIAMLAQQQSLLMAAAAKAGGASVSANGQQAGPNGFNLPAQNWPNVGYQIPGLMVPVAGQADLHKLMQSGNLATT QPMGGSVPYPASSLYSMGQVTSSANGGNTGTGSSKAQSATPVVASSNSTQSAKDFDFSSLTQGLFTRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	0	1
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	1.0	0.9123
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	2.0	0.8152
AT2G46620			P-loop containing nucleoside t...		Lus10035073 [exp]	2.4	0.8471
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	11.2	0.7957
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	12.0	0.7785
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10007926 [exp]	12.4	0.7921
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Lus10026266 [exp]	14.1	0.7532
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	18.4	0.7636
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	20.0	0.8207
AT1G54920			unknown protein		Lus10029936 [exp]	25.3	0.7125

Compare expression of checked genes

Lus10038582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.