Plant FIBer expression Database

Lus10038583 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20820 75 / 2e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037883
[exp]
142 / 2e-44 AT2G20820 83 / 8e-22 unknown protein
Lus10031625
[exp]
90 / 4e-24 AT2G20820 102 / 1e-29 unknown protein
Lus10033715
[exp]
89 / 1e-23 AT2G20820 104 / 9e-31 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G109100
[exp]
101 / 1e-28 AT2G20820 97 / 9e-28 unknown protein
Potri.013G146000
[exp]
94 / 8e-26 AT2G20820 76 / 3e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10038583 pacid=23143000 polypeptide=Lus10038583 locus=Lus10038583.g ID=Lus10038583.BGIv1.0 annot-version=v1.0
ATGCATACTCAGACCGACTTTCTTTCCACCGCTTTGTTCTCCGTCTCTTGTCTCTTCTGGTACGTTCTACCACCTTCCCCTGTTTTACTGACGGTCATGT
CCGGACGGACAGCAGCAACAGCGGCGGCCCGTCGAGTCGCTAATCTGATCCCTTGGAAACATCATGCTCCTCGTCCTCATCCTGTTCGTTCTTCTTCCCT
CCTCCAACGCCGTGGCATGGCCGGAGGCCCCGATCATCATGGAGCCCCAAAGGTGAATTTTTGGGAGGACCCTTTCAGCCCCTCTAAGTGGAAAGAAAAG
CATTTTGTTGTCGTCTCTATGACTGGTTCGGGGGTACTCATCTATGGAGGTTACAAGTATTTTGCACGAGGCGACATACATAACAACAAGGAGGAGAATA
AGGTTGGAGGAGAGCCAGCACGTTAG
AA sequence
>Lus10038583 pacid=23143000 polypeptide=Lus10038583 locus=Lus10038583.g ID=Lus10038583.BGIv1.0 annot-version=v1.0
MHTQTDFLSTALFSVSCLFWYVLPPSPVLLTVMSGRTAATAAARRVANLIPWKHHAPRPHPVRSSSLLQRRGMAGGPDHHGAPKVNFWEDPFSPSKWKEK
HFVVVSMTGSGVLIYGGYKYFARGDIHNNKEENKVGGEPAR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20820 unknown protein Lus10038583
[exp]
0 1
AT4G39120 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-... Lus10041968
[exp]
2.8 0.8195
AT3G60480 unknown protein Lus10000560
[exp]
7.5 0.8143
AT5G20080 FAD/NAD(P)-binding oxidoreduct... Lus10030059
[exp]
14.4 0.8460
AT5G45580 GARP Homeodomain-like superfamily p... Lus10012142
[exp]
21.9 0.8289
AT1G49880 EMB3106, AtErv1... EMBRYO DEFECTIVE 3106, Erv1/Al... Lus10002121
[exp]
37.3 0.8194
AT5G27920 F-box family protein (.1) Lus10020676
[exp]
42.4 0.8082
AT3G26270 CYP71B25 "cytochrome P450, family 71, s... Lus10027427
[exp]
47.8 0.8091
AT4G03140 NAD(P)-binding Rossmann-fold s... Lus10016179
[exp]
48.7 0.7609
AT1G08590 Leucine-rich receptor-like pro... Lus10027951
[exp]
56.5 0.7511
AT4G26310 elongation factor P (EF-P) fam... Lus10030360
[exp]
57.4 0.7681

Lus10038583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.