Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27390 142 / 2e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037884 [exp] 72 / 4e-16 AT4G27390 54 / 5e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405800 [exp] 177 / 2e-55 AT4G27390 174 / 2e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038584 pacid=23143025 polypeptide=Lus10038584 locus=Lus10038584.g ID=Lus10038584.BGIv1.0 annot-version=v1.0 ATGTCAACACTGCTTCAAGCTCCTCCTACCCACTTCTCGCCTCTCAACTCCATCTCCCGTAATTTCCCCTCAAAACCCCTTTCTTCCCGCCCTCCGCTGT ACTCAAAAGCTGAATGCTTTGACCAAAACAGACTCAGATTTGGAGCCTACAGGGGAAGAAGAGGGTTTCTGGAATTGGGTAGAAGGAAAGATGGTATTTT GGTGAAAGATAAAGTAGACCGGAAGAAACCGAGTAGAGTAGTTTCAGTGAGATTTAATCAGGGTTTCGGCGGAGGAGGCGGCGGCGGCAATGGTGGCAAT GCGAGGATTCTAGGAAATATTGCTTTGGCTGTTGGGCTAACTTATTTATCAGTGACTGGGCAGCTTGGTGCGGTTTTCGATGCTGTTGGCTATGTTCTGG AGACCCTCCTCTCAATTTGGCTCCTCGTAGTAATTATAACAATCGTTGGAGTGGGGGCACTTGTGTGGTGGGCTGGACGGGATATGCTTCAGAGCACTTG CCCGACTTGCGGAAATGAATTTCAGGTGTTCAAATCTACATTGGACGATGAGATACAGCAGTGTCCCTTCTGCAGTCAGCCCTTCACAGTGGTAGATGAC AAGTTTGTGCGCGATTCTGTGAAATTCACCGATGAGTCAACAACGTTCAGGGAAGCCTTCAGGGGCTTTTACCCTGGCTCCGACCAAGGTGGGAAAGAAC CATCTTCCTCTGCTGTAGTTGACGTTGAAGCAGAAGTAAAAGATGCAGACTGA
AA sequence Show only first row Show all	>Lus10038584 pacid=23143025 polypeptide=Lus10038584 locus=Lus10038584.g ID=Lus10038584.BGIv1.0 annot-version=v1.0 MSTLLQAPPTHFSPLNSISRNFPSKPLSSRPPLYSKAECFDQNRLRFGAYRGRRGFLELGRRKDGILVKDKVDRKKPSRVVSVRFNQGFGGGGGGGNGGN ARILGNIALAVGLTYLSVTGQLGAVFDAVGYVLETLLSIWLLVVIITIVGVGALVWWAGRDMLQSTCPTCGNEFQVFKSTLDDEIQQCPFCSQPFTVVDD KFVRDSVKFTDESTTFREAFRGFYPGSDQGGKEPSSSAVVDVEAEVKDAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27390			unknown protein		Lus10038584 [exp]	0	1
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	3.2	0.9610
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	5.1	0.9538
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	5.3	0.9461
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	8.3	0.9474
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	11.0	0.9395
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	11.2	0.9421
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10031051 [exp]	12.4	0.8820
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	12.7	0.9363
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	13.6	0.9259
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	15.2	0.9295

Compare expression of checked genes

Lus10038584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.