Plant FIBer expression Database

Lus10038585 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G127400
[exp]
764 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF06838 Met_gamma_lyase Methionine gamma-lyase
Representative CDS sequence
>Lus10038585 pacid=23143084 polypeptide=Lus10038585 locus=Lus10038585.g ID=Lus10038585.BGIv1.0 annot-version=v1.0
ATGAGGGCCTTCTCTTCTTGCCCACTTCCTGCTTATCCTTCTCTCTTTACAAGACCTTCCATCGCTACTGCCCTCAACAACAGCATTCAACTTCCCGTCC
TTTACCCTGACAATCCATTTGTTCCAGAGGTTGTCCAAGCAGCTGATGGTCTACATTCTGAGTTCAGAGCAGTGGATACCTTGGTGGCGCGCAACTCTAT
GCGTGTTCTAAATGCTTTTAAAAATGCTCGAATTGGATCTCATCATTTTGGAGGATCCACTGGCTATGGACATGATGAAGCTGGAGGGCGGGAGGCTCTA
GATCAAGTTTTTGCTGAAATTGTGGGAGCTGAATCCGCAATAGTTCGCTCACAGTTTTTCTCAGGGACCCATGCCATAACATGTGCTTTGTTCGCCTTTC
TGAGGCCTGGTGATGAGCTTTTGGCAATTGCCGGAGCACCTTATGACACCTTAGAGGAAGTTATCGGAAAAAGGGATTCTCATGGCATGGGCTCCTTGAA
AGATTTTGGAGTAACATACAGAGAGGTTCCTCTTGCTGATGATGGTGGCCTTGACTGGAATGCACTTGAGAGTGCTGTGAAACCTCATACAAAATGTGCA
CTAATACAAAGATCTTGTGGCTATTCATGGCGGAAAAGCTTAAGTATAAAGGATATAGAGAGGGCCATAAATATTGTCAAGATACAGAATCCTAACTGCT
TGGTCATGGTTGATAATTGCTATGGTGAATTTGTTGAAATCACTGAACCTGCGGTGGTGGGTGCAGATTTGATGGCGGGTAGTTTGATTAAAAATCCTGG
TGGAACCATTGCTCCATGTGGCGGATATGTTGCTGGTAGGAAAAAATGGGTAGAAGCAGCTGCAGCTCGTCTCTCAGCTCCAGGACTCGGAATTGACTGT
GGCTCAACACCGGGGGATGTTATGCGAGCTTATTTCCAGGGCTTATTCCTTGCCCCTCAAATGGTTGGTGAGGCGATCAAGGGAACCCTTCTGATTGCGG
AAGTCATGGCATCTAAAGGGTTTGAAGTGCAGCCTCTACCACGTGCCAGTCGACATGATACAGTCCAAGCTGTGCAGCTAGGGAACCGTGAACGTCTCCT
TGCTTTCTGCGAGGCTGTGCAGCGAAGCTCGCCGGTTGGCTCATTCACCAAACCAATAGCTGGGTCAACACCTGGATATGCATCAGAGGTGATCTTTGCT
GATGGAACCTTCGTTGATGGTAGTACCAGTGAGTTGTCATGCGATGGACCTCTGCGGGAACCATTTGCCGTATATTGTCAGGGCGGGACTCACTGGACAC
AATGGGGGATAGTTCTAGGCGAGGTATTGAAACACATTTGA
AA sequence
>Lus10038585 pacid=23143084 polypeptide=Lus10038585 locus=Lus10038585.g ID=Lus10038585.BGIv1.0 annot-version=v1.0
MRAFSSCPLPAYPSLFTRPSIATALNNSIQLPVLYPDNPFVPEVVQAADGLHSEFRAVDTLVARNSMRVLNAFKNARIGSHHFGGSTGYGHDEAGGREAL
DQVFAEIVGAESAIVRSQFFSGTHAITCALFAFLRPGDELLAIAGAPYDTLEEVIGKRDSHGMGSLKDFGVTYREVPLADDGGLDWNALESAVKPHTKCA
LIQRSCGYSWRKSLSIKDIERAINIVKIQNPNCLVMVDNCYGEFVEITEPAVVGADLMAGSLIKNPGGTIAPCGGYVAGRKKWVEAAAARLSAPGLGIDC
GSTPGDVMRAYFQGLFLAPQMVGEAIKGTLLIAEVMASKGFEVQPLPRASRHDTVQAVQLGNRERLLAFCEAVQRSSPVGSFTKPIAGSTPGYASEVIFA
DGTFVDGSTSELSCDGPLREPFAVYCQGGTHWTQWGIVLGEVLKHI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10038585
[exp]
0 1
AT2G35410 RNA-binding (RRM/RBD/RNP motif... Lus10035678
[exp]
1.4 0.9481
AT1G08540 ATSIG1, SIG1, S... SIGMA FACTOR B, RNA POLYMERASE... Lus10020325
[exp]
3.5 0.9474
AT3G01480 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cy... Lus10014534
[exp]
6.5 0.9364
AT4G29750 CRS1 / YhbY (CRM) domain-conta... Lus10027610
[exp]
6.5 0.9284
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Lus10024297
[exp]
8.2 0.9358
AT2G04530 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/... Lus10014623
[exp]
10.1 0.9199
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Lus10029446
[exp]
11.0 0.9156
AT2G25870 haloacid dehalogenase-like hyd... Lus10005489
[exp]
13.0 0.9049
AT2G04360 unknown protein Lus10012308
[exp]
13.3 0.9261
AT1G60230 Radical SAM superfamily protei... Lus10013005
[exp]
14.4 0.9240

Lus10038585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.