Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20825 177 / 5e-55 ULT ULT2 ULTRAPETALA 2, Developmental regulator, ULTRAPETALA (.1) AT4G28190 167 / 4e-51 ULT ULT1 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039791 [exp] 182 / 9e-57 AT4G28190 359 / 8e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Lus10018560 [exp] 120 / 1e-32 AT4G28190 273 / 2e-92 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145400 [exp] 185 / 3e-58 AT4G28190 380 / 2e-135 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2) Potri.019G104500 [exp] 184 / 9e-58 AT4G28190 358 / 6e-127 ULTRAPETALA1, Developmental regulator, ULTRAPETALA (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038586 pacid=23143035 polypeptide=Lus10038586 locus=Lus10038586.g ID=Lus10038586.BGIv1.0 annot-version=v1.0 ATGAAGGGAATTGCAGCACAAGGTGCGACATCAGGAGCAGCTAACGATAGTAGAAACAATGTGGAAGGAATATTGGGTGAGGTTATTGTGGAGGAAGGAG ATGTGGTATTTGGGGAACCACAGCTCCAAGCCATGGAAGGGTTTTGCAGGCCAGGGCCGGATCATGTTAAGGTCAACTGTGGTTGCACCAGCAAGAGATT TGGTGACTGCTTTGGGGTTCTCACTGTTTATTCTTCTGGAAAGTTCATCATCACTTGCCACTGCAACTCCTGCTACCGAGACAAATCTAAGGAATACACG CCTTACAAGTTCGAGAAGCACGCGAGGGGACCGTTAGGGAACAGCAAGTGGAAGAGCCATATCTGGGTGGCGATCAACGGTAAGAAAGTAGCACTATGGA GGACTGAGCTTTACAAGTACTACAGGCATGGTGCTAATGGTGGGAGTGGTTGCATAAAGCGCCAATTCCATAGAGATGACTTCATGACCTGCACTCACTG CAAGAAACAGCGCAGGTTCCGTCTCAGGAACAGGCAACAGTGCAGAGTTTACCATGATGCACTCCTGTCCAAGGATACTTGGAAATGTGCTGATATGCCT CCTGACCAAAGGATAAGCTGCGAAGATGTTGAGGAGAGGGAAAGTAGAAAGAGGTACAAAGGGTGTCCAAGGGCTTCCAACTGCAGGGGATGCACTGTCT GTGTCTGCATTGGTTGCCTCACTTGCAGGTTCACTGACTGCAACTGCCGTACCTGTCTCGACTTCATGATAAATGCTGACCCTTAG
AA sequence Show only first row Show all	>Lus10038586 pacid=23143035 polypeptide=Lus10038586 locus=Lus10038586.g ID=Lus10038586.BGIv1.0 annot-version=v1.0 MKGIAAQGATSGAANDSRNNVEGILGEVIVEEGDVVFGEPQLQAMEGFCRPGPDHVKVNCGCTSKRFGDCFGVLTVYSSGKFIITCHCNSCYRDKSKEYT PYKFEKHARGPLGNSKWKSHIWVAINGKKVALWRTELYKYYRHGANGGSGCIKRQFHRDDFMTCTHCKKQRRFRLRNRQQCRVYHDALLSKDTWKCADMP PDQRISCEDVEERESRKRYKGCPRASNCRGCTVCVCIGCLTCRFTDCNCRTCLDFMINADP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20825	ULT	ULT2	ULTRAPETALA 2, Developmental r...		Lus10038586 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.4	1.0000
					Lus10010414 [exp]	7.3	1.0000
					Lus10025056 [exp]	8.9	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	9.0	1.0000
					Lus10010663 [exp]	9.4	1.0000
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	12.4	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	13.3	1.0000
					Lus10014229 [exp]	13.3	1.0000
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10028665 [exp]	13.4	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	14.1	1.0000

Compare expression of checked genes

Lus10038586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.