Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13682 924 / 0 LDL2 LSD1-like2 (.1) AT3G10390 704 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 677 / 0 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT4G16310 279 / 1e-79 LDL3 LSD1-like 3 (.1) AT1G65840 165 / 8e-44 ATPAO4 polyamine oxidase 4 (.1) AT2G43020 163 / 4e-43 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 155 / 1e-40 ATPAO3 polyamine oxidase 3 (.1) AT4G29720 95 / 4e-20 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 87 / 8e-18 ATPAO1, APAO polyamine oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037885 [exp] 1391 / 0 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10017464 [exp] 674 / 0 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10015996 [exp] 672 / 0 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 667 / 0 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10028817 [exp] 478 / 5e-161 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10024311 [exp] 285 / 3e-81 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10033928 [exp] 283 / 6e-81 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 165 / 1e-43 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 161 / 2e-42 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127600 [exp] 1105 / 0 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.008G035200 [exp] 687 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 686 / 0 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.010G227200 [exp] 684 / 0 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.005G235400 [exp] 280 / 8e-80 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 273 / 1e-77 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 163 / 3e-43 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 162 / 1e-42 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 162 / 1e-42 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 161 / 2e-42 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10038587 pacid=23143093 polypeptide=Lus10038587 locus=Lus10038587.g ID=Lus10038587.BGIv1.0 annot-version=v1.0 ATGGAGACCAGTAGCAGGGAAGGCTCGATTACTAAGAGGTCCTTGAGGAAGAAAGCTGCATCGCGGAATTATGATGAGAATTTGATGGATGACATGATCG AGAAGCACCTGGGTGGAACTTTCAAGAAAAGGCATCGGACAAAGGAGGATTTGGAGAAAGAGACCGAGAAGGAGGCGATGCTAGCAATATCTTTAGGGTT TCCAATTGATTCGTTGCTTGAGGAGGAGATTCAAGCTGGAGTAGTGAAGCAATTGGGAGGTAAAGAGCAGAACGATTATATTGTGGTGCGTAACCATATT CTTACTAGATGGAGGAGTAATGTACGTATGTGGCTTACTAAAGGGCAAATAAGAGAAACTGTGAGCGCCGACTATGAGCATTTATTATCCTCAGCATATG ACTTCCTTTTATATAATGGGTATATCAATTTTGGGATTTTGTCTGATGCATCTCTTATACCTGAAATGACAAATGAATTGTCTGTTATAGTTGTTGGTGC TGGACTTGCTGGGCTAGCTGCTGCAAGACAGCTTATGTCCTTTGGTTTCAAGGTTGTTGTTCTTGAAGGTAGGAACCGTCCTGGAGGTAGAGTATATACT CAAAAGATTGGTAGAGATGGTCAAGTTGCTGTTGCTGATATTGGTGCAAGTGTCATTACTGGTATGCATGCTAACCCTCTTGGAGTTCTGGCTAGACAAC TTTCTATTCCGCTCCACAAGGTTCGAGATAACTGTCCTTTGTACAGACCAAATGGGGAACCTGTTGATCAGCAGATGGATTCCAGTGTTGAATTTACCTT TAACAAGTTGCTTGACAAAGTAATGGAACTGAGACAAGTTATTGGTGGATTTGGGAATGATGTTACTTTAGGGTTGGTTCTGGAGAAACTCCAACAGTTG TATGGTGTGGCTAAAACTACTGAGGAGCGACAACTGCTTGACTGGCATCTTGCTAACCTTGAATATGCAAATGCAGGATGCCTTTCTGATCTGTCCCTTT CTGATCTGTCAGCAACGTTCTGGGATCAGGATGATCTGTATGAAATGGGTGGGGACCACTGTTTTCTTGCTGGTGGAAATTGGCGGTTAATAGCATCATT GTGCCAGGGAGTACCCATACTCTATGGTAGAACGGTCGATTCCATTAAATACAGTGAGGATGGTGTTTCAGTAGTTGTTGGTGAACAGGTTTTTCAAGCA GATATGGTTCTGTGCACAGTGCCTCTTGGAGTCTTGAAGAGAAGGAGCATCAGATTTGAACCCGAGTTGCCTGGAAGGAAGCTTGCAGCGATCGACAGGT TGGGATTTGGGTTGCTCAATAAGGTAGCCATGCTTTTTCCGCAAGTTTTTTGGGGAGAGGAGCTGGATACATTTGGATGTCTAAATGATCACAGCACCAA GCGGGGTGAATTCTTTTTGTTCTATGGCAATCATACTGTTTCTGGAGGTGCAGTACTCATTGCTTTGGTGGCTGGAGAAGCTGCACAAATGTTTGAATCA GAAGACCCATCAACTTTATTCCAACGTGTTCTTGACAAGCTCAGAGGTATATACAATCCCAAGGGCATACAAGTTCCCGATCCTATACAATCAATATGTA CAAGATGGGGCAGCGATCCCCTTAGTTATGGTTCATATTCTCATGTCAGGGTGCAGTCTTCCGGCTTTGACTATGATATCCTGGCAGAGAGTGTGGGTGG TCGGCTCTTTTTTGCTGGTGAGGCCACAACCAGGCAATATCCTGCGACCATGCATGGTGCCTTTATAAGTGGCTTGAGAGAAGCTTCTCGCATTCTGAAA GCCAGCAGATCCCAGAATCCTAGTTTGAAAAAGTTGGTGCCAAAGAATCTAACATCAATTAGTGATACACTGGAAAAATTGTTCAAGAGACCTGATTTTT CGTTTGGGAATTGCTCTGTTGTGTTTAATCCCTTGGAAGAAGACCCAAAATCATTGGGAATTATGAGGGTCACATTTGATACTGGTGATAGCAACTTGAA GGAAGAGTTTGAGAATAGTTTAAGGTGTCCTTTGAATCTACAATTGCAGCTTTACACAATGCTATCTCGTCAACAGGTAATTGATGCTCAACGGGTAACT GGCGGAGAAAAGGCGATCTTGACCTATCTAACCAAAACGCTCGACCTGAAATTTGTGGGTTGTGCAGCCTTGGCAAGTATAGCTTATGCCTTGATATCTA GGATTGCAAATCCACGAAAGCGCAGGGGGAGGACCAAGATAAACGGGGTTGATAATAACAGCACAGTACAACAATGA
AA sequence Show only first row Show all	>Lus10038587 pacid=23143093 polypeptide=Lus10038587 locus=Lus10038587.g ID=Lus10038587.BGIv1.0 annot-version=v1.0 METSSREGSITKRSLRKKAASRNYDENLMDDMIEKHLGGTFKKRHRTKEDLEKETEKEAMLAISLGFPIDSLLEEEIQAGVVKQLGGKEQNDYIVVRNHI LTRWRSNVRMWLTKGQIRETVSADYEHLLSSAYDFLLYNGYINFGILSDASLIPEMTNELSVIVVGAGLAGLAAARQLMSFGFKVVVLEGRNRPGGRVYT QKIGRDGQVAVADIGASVITGMHANPLGVLARQLSIPLHKVRDNCPLYRPNGEPVDQQMDSSVEFTFNKLLDKVMELRQVIGGFGNDVTLGLVLEKLQQL YGVAKTTEERQLLDWHLANLEYANAGCLSDLSLSDLSATFWDQDDLYEMGGDHCFLAGGNWRLIASLCQGVPILYGRTVDSIKYSEDGVSVVVGEQVFQA DMVLCTVPLGVLKRRSIRFEPELPGRKLAAIDRLGFGLLNKVAMLFPQVFWGEELDTFGCLNDHSTKRGEFFLFYGNHTVSGGAVLIALVAGEAAQMFES EDPSTLFQRVLDKLRGIYNPKGIQVPDPIQSICTRWGSDPLSYGSYSHVRVQSSGFDYDILAESVGGRLFFAGEATTRQYPATMHGAFISGLREASRILK ASRSQNPSLKKLVPKNLTSISDTLEKLFKRPDFSFGNCSVVFNPLEEDPKSLGIMRVTFDTGDSNLKEEFENSLRCPLNLQLQLYTMLSRQQVIDAQRVT GGEKAILTYLTKTLDLKFVGCAALASIAYALISRIANPRKRRGRTKINGVDNNSTVQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	1.4	0.9201
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	2.4	0.9021
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	3.9	0.8786
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10007468 [exp]	4.0	0.8647
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	6.7	0.8891
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033458 [exp]	14.7	0.8832
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10030865 [exp]	16.6	0.8277
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	19.4	0.8725
AT5G36930			Disease resistance protein (TI...		Lus10042165 [exp]	22.6	0.8550
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	27.7	0.8550

Compare expression of checked genes

Lus10038587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.