Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54370 473 / 1e-168 Late embryogenesis abundant (LEA) protein-related (.1) AT4G27400 429 / 3e-151 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 378 / 4e-131 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 280 / 4e-91 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G60520 265 / 1e-86 Late embryogenesis abundant (LEA) protein-related (.1) AT3G19430 253 / 2e-79 late embryogenesis abundant protein-related / LEA protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020169 [exp] 651 / 0 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 641 / 0 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10037886 [exp] 561 / 0 AT5G54370 394 / 4e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 379 / 1e-131 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 366 / 4e-126 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 345 / 1e-117 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 265 / 1e-86 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 253 / 2e-82 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 254 / 9e-82 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G127900 [exp] 412 / 1e-144 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.012G145400 [exp] 370 / 9e-128 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 264 / 9e-86 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 256 / 2e-83 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G145700 [exp] 246 / 1e-77 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 243 / 2e-73 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.001G405650 [exp] 0 / 1 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10038588 pacid=23143161 polypeptide=Lus10038588 locus=Lus10038588.g ID=Lus10038588.BGIv1.0 annot-version=v1.0 ATGAAGGTAACTGCAACGACGACTATTGGCACTAGTGCCGCCATTTTGATGGTGGCAGCTGCTCTACAGCTAGCCCTCGTTTCAGCTGCCGATCATTATT ACCCGAAAGCAGAAACTGTGTGGTGCAACAACACTCTTAGCCGTTGCTCTGGCGCTTACGTCCCCTGCCCTGCCGAATGTCCCTCAACTACCTACCCTAA TGCCAAATCTAAAGTTTGTCACGTCAACTGTGATCATCCCCTTTGCAAGGCCCAGTGCAAGAAGCGAAAGCCAAACTGTGACGCACCTGGATCAGCCTGT TACGACCCCCGTTTCGTTGGAGGAGATGGCGTCGTGTTCTACTTCCACGGCAAGACCAATGAGGTCTTTAGCTTGGTCTCTGACCCAAACTTCCAGATCA ATGGACGTTTCATTGGCCACAGGCCTTCGGGGAGAAGCCGTGACTTCACATGGATTCAATCCTTGGGAATAATCTTCAACTCCCACAAATTCACCCTCGA GGCAACCAAGTCCGCAACATGGGATAGCAACATTGAGCATCTCAAGTTCACTTACAAGGGTCAACGCCTCTCGATCGCTGAGGGATCTCTTTCTTCGTGG TACTCTGGGGAGACCAAAGACATTAAAGTCGAGAGGGTTTCGAACAAGAACAGTGTCATTGTCACACTTAAGGACAAGGCGGAGATCCTTGTGAATGTGG TCCCAGTTACCAAGGAAGATGACAGAGTCCACAAATATCAAGTCCCTCAGGATGACTGTTTTGTTCATTTGGAAGTTCAGTTCAGGTTCTTCGACCTCTC CCCTAAAGTTGATGGAGTATTGGGTAGGACTTACCAGCCCGATTTCGAGAACTCCGCTGCCAAACCCGGAGTGGCAATGCCGGTTATGGGTGGGGAAGAC AAGTACAGAACATCGGATCTTCTTTCCACGGAATGCGGGTCTTGCATCTTTTCATCATCAGAAACCACCGAGGGGAAGAATGTGATCAACTTTCCTACAC TCGACTGCACCAGGGGATCTGCAGCTGGTTATGGCATTGTTTGCAGAAAGTGA
AA sequence Show only first row Show all	>Lus10038588 pacid=23143161 polypeptide=Lus10038588 locus=Lus10038588.g ID=Lus10038588.BGIv1.0 annot-version=v1.0 MKVTATTTIGTSAAILMVAAALQLALVSAADHYYPKAETVWCNNTLSRCSGAYVPCPAECPSTTYPNAKSKVCHVNCDHPLCKAQCKKRKPNCDAPGSAC YDPRFVGGDGVVFYFHGKTNEVFSLVSDPNFQINGRFIGHRPSGRSRDFTWIQSLGIIFNSHKFTLEATKSATWDSNIEHLKFTYKGQRLSIAEGSLSSW YSGETKDIKVERVSNKNSVIVTLKDKAEILVNVVPVTKEDDRVHKYQVPQDDCFVHLEVQFRFFDLSPKVDGVLGRTYQPDFENSAAKPGVAMPVMGGED KYRTSDLLSTECGSCIFSSSETTEGKNVINFPTLDCTRGSAAGYGIVCRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	1.4	0.9901
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	2.8	0.9817
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	2.8	0.9593
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	3.9	0.9506
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	4.5	0.9719
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10021626 [exp]	5.1	0.9404
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	5.5	0.9698
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	5.7	0.9751
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	5.8	0.9497
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10034703 [exp]	6.3	0.9553

Compare expression of checked genes

Lus10038588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.