Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23620 289 / 2e-98 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23600 266 / 1e-89 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23610 259 / 6e-87 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT2G23590 248 / 5e-82 ATMES8 methyl esterase 8 (.1) AT5G10300 240 / 2e-79 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT2G23580 235 / 3e-77 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT4G37150 234 / 7e-77 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT2G23560 227 / 3e-74 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23550 224 / 7e-73 ATMES6, ABE1 ALPHA/BETA FOLD HYDROLASE/ESTERASE 1, methyl esterase 6 (.1.2) AT3G50440 207 / 6e-66 ATMES10 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015532 [exp] 201 / 8e-64 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10022467 [exp] 200 / 1e-63 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10023326 [exp] 191 / 4e-60 AT3G50440 263 / 3e-88 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10009205 [exp] 171 / 2e-52 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005402 [exp] 163 / 7e-49 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10009203 [exp] 164 / 1e-48 AT2G23620 205 / 6e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10005400 [exp] 162 / 1e-48 AT2G23610 206 / 8e-66 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Lus10005401 [exp] 162 / 1e-47 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10000841 [exp] 124 / 4e-35 AT2G23570 129 / 1e-37 ARABIDOPSIS THALIANA METHYL ESTERASE 19, methyl esterase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G037700 [exp] 305 / 1e-104 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 296 / 4e-101 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133800 [exp] 238 / 2e-78 AT2G23620 270 / 7e-91 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133700 [exp] 238 / 3e-78 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.005G133600 [exp] 237 / 7e-78 AT2G23620 274 / 8e-93 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037200 [exp] 213 / 6e-69 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037033 [exp] 213 / 6e-69 AT2G23620 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037000 [exp] 213 / 1e-68 AT2G23620 236 / 7e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037100 [exp] 211 / 5e-68 AT2G23620 235 / 1e-77 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.009G107200 [exp] 205 / 4e-65 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10038592 pacid=23143129 polypeptide=Lus10038592 locus=Lus10038592.g ID=Lus10038592.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAATATTATTATTTGAAAAGTCGCACTTCGTGCTGGTCCACGGAGCCTGCCATGGAGCCTGGAGCTGGTTCAAGGTAAAGCCCCTGCTCG AATCCGCCGGCCACCGTGTCACTGTCCTAGATCTGTCTGCTTCCGGCATCGACACTAAAGCAATTCATCAAGTTCCCACTTTCCGAGAGTATACTCAGCC CCTCCTCGATATTCTGGCGGCTAGCGATGAAAAGTCCGTCATTCTAGTCGGCCACAGTTTAGGTGGCCTGAGTTTAGCTCTGGCGATGGAACATTTCCCC AACAAGATCTCGGTTGCAGTTTTCTTGTCAGCTTTCATGCCTGACACAATCCACTCTCCCTCTTTCGTCCTCAATCAGTATTGTGCAAAAGCTCCTCCGG ATGCCTGGTTGGACACTGAATTCGCCCCTGCCCGCAGTTCTCACCCTGAATTTTTGACCATGTATTTCGGGCCTGAATTCCTCGCTTCCAGGGTCTACCA ACTCTGCACTAAAGAGGATCTCGAACTGGCGAAGGCGCTTGTGAGGCCGAGCTCTCTGTTCATACATGATCTCAGCAGAGCAGAAAAGTTTACAGAAGAG GGATATGGTACGGTTCGTAGAGTGTTTGTGGTTTGCAATAAAGATGAAGCAATAAATGTGGAGTTTCAGAGATGGATGATTCAGAATTATGACGTTGAAG AAGTTCTGGAGATCAATGATTCGGATCATATGCCCATGCTCTGTCAACCCATCAAGCTCTGCAGTATCCTTTTTAAGATAGCACGCAATGCAACGCAAGA AATTGCACTGTAA
AA sequence Show only first row Show all	>Lus10038592 pacid=23143129 polypeptide=Lus10038592 locus=Lus10038592.g ID=Lus10038592.BGIv1.0 annot-version=v1.0 MAEEILLFEKSHFVLVHGACHGAWSWFKVKPLLESAGHRVTVLDLSASGIDTKAIHQVPTFREYTQPLLDILAASDEKSVILVGHSLGGLSLALAMEHFP NKISVAVFLSAFMPDTIHSPSFVLNQYCAKAPPDAWLDTEFAPARSSHPEFLTMYFGPEFLASRVYQLCTKEDLELAKALVRPSSLFIHDLSRAEKFTEE GYGTVRRVFVVCNKDEAINVEFQRWMIQNYDVEEVLEINDSDHMPMLCQPIKLCSILFKIARNATQEIAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	1.0	0.9180
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	9.3	0.9104
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	9.6	0.9124
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	10.3	0.8638
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	12.0	0.8978
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	12.6	0.9031
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	15.7	0.8981
AT1G11655			unknown protein		Lus10001141 [exp]	16.0	0.8873
AT5G53420			CCT motif family protein (.1.2...		Lus10014919 [exp]	17.4	0.8431
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10034200 [exp]	18.4	0.8287

Compare expression of checked genes

Lus10038592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.