Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23600 58 / 5e-11 ATMES2, ACL, ATME8 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) AT2G23620 57 / 8e-11 ATMES1 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) AT2G23610 52 / 4e-09 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) AT4G37140 50 / 6e-09 ATMES20, MEE69 MATERNAL EFFECT EMBRYO ARREST 69, ARABIDOPSIS THALIANA METHYL ESTERASE 20, alpha/beta-Hydrolases superfamily protein (.1) AT4G37150 50 / 2e-08 ATMES9 ARABIDOPSIS THALIANA METHYL ESTERASE 9, methyl esterase 9 (.1) AT5G10300 50 / 2e-08 AtHNL, HNL, ATMES5 HYDROXYNITRILE LYASE, ARABIDOPSIS THALIANA METHYL ESTERASE 5, methyl esterase 5 (.1) AT2G23590 50 / 2e-08 ATMES8 methyl esterase 8 (.1) AT2G23560 45 / 2e-06 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT2G23580 45 / 2e-06 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) AT4G16690 43 / 9e-06 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038592 [exp] 77 / 5e-18 AT2G23620 306 / 4e-105 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Lus10000840 [exp] 49 / 1e-08 AT2G23560 88 / 6e-23 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Lus10009205 [exp] 51 / 2e-08 AT2G23580 194 / 3e-61 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10005401 [exp] 51 / 2e-08 AT2G23600 184 / 5e-56 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10005402 [exp] 50 / 3e-08 AT2G23580 204 / 3e-65 ARABIDOPSIS THALIANA METHYL ESTERASE 4, ALPHA/BETA FOLD HYDROLASE/ESTERASE 4, methyl esterase 4 (.1.2) Lus10022467 [exp] 50 / 4e-08 AT3G50440 238 / 2e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Lus10012854 [exp] 48 / 5e-08 AT2G23600 147 / 2e-45 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10015532 [exp] 48 / 1e-07 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10019645 [exp] 46 / 4e-07 AT2G23600 139 / 7e-42 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131100 [exp] 52 / 9e-09 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.007G036700 [exp] 49 / 1e-07 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107200 [exp] 49 / 1e-07 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.009G107500 [exp] 48 / 1e-07 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G037700 [exp] 48 / 2e-07 AT2G23620 300 / 6e-103 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037300 [exp] 48 / 2e-07 AT2G23620 289 / 2e-98 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.013G158200 [exp] 47 / 4e-07 AT3G10870 296 / 4e-101 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Potri.007G036800 [exp] 47 / 6e-07 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.005G133700 [exp] 45 / 2e-06 AT2G23620 277 / 6e-94 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1) Potri.007G037000 [exp] 45 / 2e-06 AT2G23620 236 / 7e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 1, methyl esterase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038593 pacid=23142989 polypeptide=Lus10038593 locus=Lus10038593.g ID=Lus10038593.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAATAAGATTATTTGAAAAGTCGCACTTCGTGCTGGTTCACGGAGCCTGCCATGGAGCGTGCAGCTGGTTCAAGATAAAGCCCCTCCTCG AATCCGCGGGCCAAATTGAAGGGAGCTCCTCCTCCACAACCAACTCGATTCAGCTTCAAAAACAACTCGGCAAGAAAAGAAGTCGTTTATCGTCGTTAAT GGAAGCAATTCGTCCCGCGGTGAAACCCCGATCTCCGACTCTGGTGGAACAATCGCCAGCTGACTCATCGAAAATCGTAACCCCACCGTACGTTTTGTTC TTCTTCGACCAAGGTTTTCAGAATCGAACCGGTAATTGA
AA sequence Show only first row Show all	>Lus10038593 pacid=23142989 polypeptide=Lus10038593 locus=Lus10038593.g ID=Lus10038593.BGIv1.0 annot-version=v1.0 MAEEIRLFEKSHFVLVHGACHGACSWFKIKPLLESAGQIEGSSSSTTNSIQLQKQLGKKRSRLSSLMEAIRPAVKPRSPTLVEQSPADSSKIVTPPYVLF FFDQGFQNRTGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10038593 [exp]	0	1
AT3G19920			unknown protein		Lus10017384 [exp]	1.0	0.8500
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10040354 [exp]	7.1	0.7329
AT5G59040		COPT3	copper transporter 3 (.1)		Lus10021107 [exp]	10.4	0.7476
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	11.3	0.7848
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	28.7	0.7732
					Lus10019466 [exp]	47.9	0.6847
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	50.2	0.6695
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035746 [exp]	76.3	0.6894
					Lus10008920 [exp]	87.2	0.6551
					Lus10029831 [exp]	99.0	0.6962

Compare expression of checked genes

Lus10038593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.