Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024456 [exp] 74 / 2e-15 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1) Lus10004769 [exp] 69 / 1e-14 ND / Lus10005469 [exp] 64 / 1e-12 ND / Lus10017832 [exp] 63 / 3e-12 ND / Lus10038551 [exp] 62 / 3e-12 ND / Lus10006132 [exp] 57 / 2e-10 ND / Lus10033023 [exp] 58 / 4e-10 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10021194 [exp] 57 / 4e-10 ND / Lus10005726 [exp] 58 / 5e-10 AT5G51200 2356 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038594 pacid=23143023 polypeptide=Lus10038594 locus=Lus10038594.g ID=Lus10038594.BGIv1.0 annot-version=v1.0 ATGGATAGCCGGACACAAATGCAGTTTGATTCTCCAAATCAGAATTTCTCACTATTTCATTATGAACGTCAGAATCAATATGATTTTCATTATGATGGTT TTGAAAATGATCCAGGTTATTCAAATTGGCAAGACAAATCTAGTTTTCATGGAGATTCTCAGTTTCATGACTCGCTGAATGGAAATCAAGAAGATGAGGA GCCTTTGAAGTGTGGAGTTAACAATATTAGCACCACTTTGTTGGTCAATGATATTCATGATCCACCCGAAGAGCCTACAGCCCTAGAGGAGCCAACGACC CCAAATGTCAACTCTATATCTTCTTCAAATAATAAACCCACCGATGACACGAAGCCTACTACTAAGACAACTAAAAGAAAGCGCCTTAGTAGGAGAAAAA GGAAGAGGCATCGCCAAGAGTTGACGATGGTTGAGTACGCTAAGAGAGAGGAGGATGTGATTATGCTTAGTCCTTTGATGAAGATTGATTCTACTCCTAC CGGTTGTGTTGAGTTTACTCCTCCACAATGGGAAGTATTCAAGTAA
AA sequence Show only first row Show all	>Lus10038594 pacid=23143023 polypeptide=Lus10038594 locus=Lus10038594.g ID=Lus10038594.BGIv1.0 annot-version=v1.0 MDSRTQMQFDSPNQNFSLFHYERQNQYDFHYDGFENDPGYSNWQDKSSFHGDSQFHDSLNGNQEDEEPLKCGVNNISTTLLVNDIHDPPEEPTALEEPTT PNVNSISSSNNKPTDDTKPTTKTTKRKRLSRRKRKRHRQELTMVEYAKREEDVIMLSPLMKIDSTPTGCVEFTPPQWEVFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038594 [exp]	0	1
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	1.4	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	6.5	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	7.9	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	9.2	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	10.0	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	10.2	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	11.2	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	12.1	1.0000
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	12.8	0.9843
					Lus10011636 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10038594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.