Gene [FLAX] | FIBexDB

Lus10038596 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT3G18990	40 / 0.0003	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10003826 [exp]	208 / 3e-70	AT3G18990	42 / 3e-05	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10039303 [exp]	79 / 2e-17	AT3G18990	76 / 1e-14	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10027543 [exp]	59 / 9e-11	AT3G18990	63 / 2e-11	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10004924 [exp]	55 / 1e-09	AT3G18960	81 / 1e-18	AP2/B3-like transcriptional factor family protein (.1)
Lus10033144 [exp]	53 / 1e-08	AT4G34860	944 / 0.0	alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
Lus10014359 [exp]	50 / 8e-08	AT3G18990	79 / 1e-16	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10000320 [exp]	50 / 9e-08	ND	/
Lus10025913 [exp]	49 / 3e-07	AT3G18990	81 / 2e-18	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Lus10026067 [exp]	49 / 4e-07	AT3G18990	76 / 6e-16	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.010G191500 [exp]	48 / 5e-07	AT3G18990	189 / 5e-57	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Potri.004G147200 [exp]	45 / 6e-06	AT1G49480	110 / 5e-28	related to vernalization1 1 (.1)
Potri.004G230100 [exp]	44 / 2e-05	AT3G18990	161 / 1e-44	REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)

PFAM info

Representative CDS sequence

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>Lus10038596 pacid=23143151 polypeptide=Lus10038596 locus=Lus10038596.g ID=Lus10038596.BGIv1.0 annot-version=v1.0

ATGGAGGAACAAGCTGGAATGTTGATGTTCAAGGCGAATATCCCTCGTTTCGCGAAGATTATCTTGTACGAGACAGCTCGTACTAGAAAGCTGAGGATTC

CAGCGGTGTATGCTGAAGAGCATGGAGCTGAACTTCCCAACACAGTAGTTCTCAAACTCCTAAATGGCTCGGAATGGGAAGTCGGAGTGATCAGAAGTGG

TCGCTCGAACATCTGGTTCAGCTCCTATAATTGTAACCCATCAAACGCGAAACCTAATTTTCGGAAGGACCGAGGCCTTCCGATACCTAATTTTCGGAAG

GGATCGAGGCCTTCAACCCATCAAACGCGAAACCTAATTTTCGGAAGGACCGGCGCCTTCCGATACCTAATTTTCGGAAGGGATCGAGGCCTTCGGAAAC

TAATGTTCGGGAGGCACCGAGGGCTTCGGAAACATCAATTTCATACCCTAAAGCCTAAATTGTAA

AA sequence

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>Lus10038596 pacid=23143151 polypeptide=Lus10038596 locus=Lus10038596.g ID=Lus10038596.BGIv1.0 annot-version=v1.0

MEEQAGMLMFKANIPRFAKIILYETARTRKLRIPAVYAEEHGAELPNTVVLKLLNGSEWEVGVIRSGRSNIWFSSYNCNPSNAKPNFRKDRGLPIPNFRK

GSRPSTHQTRNLIFGRTGAFRYLIFGRDRGLRKLMFGRHRGLRKHQFHTLKPKL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038596 [exp]	0	1

Lus10038596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.