Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54390 477 / 4e-169 ATAHL, AHL HAL2-like (.1) AT5G63980 270 / 2e-87 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 238 / 1e-75 Inositol monophosphatase family protein (.1) AT5G63990 232 / 3e-73 Inositol monophosphatase family protein (.1.2) AT5G64000 213 / 4e-66 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT4G05090 112 / 1e-27 Inositol monophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037888 [exp] 726 / 0 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10011231 [exp] 494 / 9e-175 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10018453 [exp] 493 / 2e-174 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10015663 [exp] 217 / 7e-67 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 194 / 3e-59 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10006739 [exp] 110 / 7e-27 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10007817 [exp] 109 / 3e-26 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124700 [exp] 573 / 0 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.011G044900 [exp] 553 / 0 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 541 / 0 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.007G105100 [exp] 250 / 1e-79 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 245 / 9e-78 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 120 / 3e-30 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10038597 pacid=23143087 polypeptide=Lus10038597 locus=Lus10038597.g ID=Lus10038597.BGIv1.0 annot-version=v1.0 ATGGGAGATGCAAATTACGCCAGGGAATTGGATATAGCCGTTCGCGCTGTTCATATGGCTTGCGCTCTTTGTCAGAGAGTGCAGCAAGGATTGGTTTCTC ATAGCACCGGACAAGTTAAGTCTAAAGATGACGATTCTCTTGTTACTGTTGCAGATTGGAGTGTTCAAGCAACAGTTAGTTGGATTCTGGCCGAATCATT TGGGGATCAAGATGTCTCCATAGTTGCTGAAGAAGATATTCAAACTCTTTCAAAGGCTGAATTAGCAGACTTGCTGGAAGCCGTCACAAAAACCGTCAAT GAAAGCTTAGCAGAGGCACGGAAATATGGTCTCCATAGTCCCAAGAAGTCCCTTGGAGCCTCGCAAGTTCTTGAGGCTATCAGCAGATGCAACTCAACAG GGGGGCCTACTGGCAGACATTGGGTGCTTGACCCTGTTGATGGAACATTGGGATTTGTTCGAGGGGATCAATATGCTGTAGCTTTAGCTCTGATTGAGGA TGGGAAAGTTATTATTGGAGTTCTTGGCTGTCCTAATTACCCTATGAAGAATGGGTGGTTGAATCATCATCATCATAAGTTTGATGAGCGTATCGCTGAG TCATCCTCCACAGCTACTGAAACTTGGGAGAAAGGGTGTGTTATTTATTCACAGAAAGGCAGCGGCAAAGCGTGGATGCAACCATTAATCCACAAGAACA AGATACTCGAATGGCCAAATTCTGCACGGCAGATTTACGTTTCATCAATCGAAGATCCAGGACAAGCAACCTTCTGTGAACCAGTCGAGAAGGCTAATTC AAACCACTCCTTCACAGCTGGAGTTGCTTATACCATGGGGTTCAAAAAACAGCCCCTACGTGTGCATAGCATGGTAAAATATGCTGCCATTGCAAGGGGA GACGCTGAAATTTTCATGAAATTTGCACGATCTGGGTACAAAGAGAAGATATGGGATCACGCTGCAGGTGTTGTAATTGTCGAGGAGGCTGGTGGTGTAG TAACTGATGCTGGAGGACGTCCCCTTGACTTCTCAAGAGGAATTTACTTAGAGGGCCTTGACCGAGGGATAGTCGCTTGCTGTAGCGCCAAATTGCATGA AAGATTCATTGAAGCTGTGTATGCTAGTTGGGATTCTTCTAATCTTTAA
AA sequence Show only first row Show all	>Lus10038597 pacid=23143087 polypeptide=Lus10038597 locus=Lus10038597.g ID=Lus10038597.BGIv1.0 annot-version=v1.0 MGDANYARELDIAVRAVHMACALCQRVQQGLVSHSTGQVKSKDDDSLVTVADWSVQATVSWILAESFGDQDVSIVAEEDIQTLSKAELADLLEAVTKTVN ESLAEARKYGLHSPKKSLGASQVLEAISRCNSTGGPTGRHWVLDPVDGTLGFVRGDQYAVALALIEDGKVIIGVLGCPNYPMKNGWLNHHHHKFDERIAE SSSTATETWEKGCVIYSQKGSGKAWMQPLIHKNKILEWPNSARQIYVSSIEDPGQATFCEPVEKANSNHSFTAGVAYTMGFKKQPLRVHSMVKYAAIARG DAEIFMKFARSGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSRGIYLEGLDRGIVACCSAKLHERFIEAVYASWDSSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10038597 [exp]	0	1
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10038169 [exp]	2.4	0.8638
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	4.9	0.8662
AT1G35780			unknown protein		Lus10009931 [exp]	5.3	0.8452
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	10.5	0.8223
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	12.7	0.8579
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	17.1	0.8565
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	21.7	0.8491
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	24.3	0.8424
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	25.9	0.8469
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	26.1	0.8229

Compare expression of checked genes

Lus10038597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.