Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 621 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 570 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 551 / 0 EFR EF-TU receptor (.1) AT3G47110 535 / 4e-176 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 369 / 2e-113 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 336 / 3e-100 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 335 / 1e-99 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 330 / 4e-98 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G08850 328 / 6e-98 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 840 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 808 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 808 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 804 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 799 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 786 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 783 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 783 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 782 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 726 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 724 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 721 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 700 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 693 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 686 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 676 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 670 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 669 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 668 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10038598 pacid=23143153 polypeptide=Lus10038598 locus=Lus10038598.g ID=Lus10038598.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGGAAATTCTGGGTATTTGTTGCAATTGCAGTTCTTCAGTTCTCCAACTGCAGTTTCTCCCTTACTGCTGCTGCTGCTGCTGCTACTGCTT TCAGCAGTGAAACAGATCGTGATGCTTTGCTTCAGTTCAAGTCCAAAATTTCTGGTGATCCTCTCCAGGTTTCGAGCTCATGGAATGATTCCACGCCCTT CTGTGAGTGGCATGGTGTTACTTGTTCCACAAGGGACCAGAGAGTCACTGCTCTGAATTTGCCATCTCTGAAGCTCTCAGGCTCACTTTCACCACACATT GGCAATCTGAGCTTCCTGATTGACCTGGTTATTTACAACAACAGCTTCACTAAGGAAATTCCTCCGGAAATTCGCCGCCTTCAGAGATTGGAGCGGCTTG GGCTCCTTAACAACTCTTTTACTGGTGAAATTCCATCCAACATCTCATCCTGCTCTGCTCTCATCATATTCCAAGCAGCATATAACAGGTTGGAAGGTGA ATTACCATGGCAGATTGGGTCCAGGAACAAACTCCAGTTTCTGGTCGTAGCTGGAAACAATCTAAGAGGAAAATCTCTCCCTCTTTTGATGTTGGCGGCA GCAGATAACCATTTGACTGGAACAATTCCTGATGCTCTTGGCCAATTGAAGAATCTGTGGGGTCTCTCTGTAGAGATCAACAGCTTATATGGTGAAATCC CACTTCCCATCTTCAATATTTCTACTCTCATGGATGTGCACTTCTCCATGAACCAATTCCATGGAGCACTCCCTCGTGATCTAGCAATGCAAGATAACGA GTTCACAGGGAGTATGTCTAGTATGTGGAGCTCTCGCAACCTCACACGCTTTTTCATCCAAAACAACTCTCTTGGAAGTGGATTGGCTAATGATTTGATC TTCATTTCTTCTTTGACTAATGCCACCAGTTTGGTATTCATCGATATAGCCGACAACAATTTCGGAGGCAGCATTCCGGAGCAGATTTGCAACTTGTCAA CTACACTTACGACTCTACAGTTAAATGGCAATAGAATAACAGGTAGCATACCAAGTGGAATTGAGAATCTTGTCAGCTTATACAAGTTTGAAGCATTTCA GAACAATCTCTCAGGTATTATTCCTTCTACCATCGGGAATATGAAAGCCCTGGTACTGCTGGATTTGAGCAGCAACGGCTTCACAGGATATGTTCCATCA TCAATTGGAAACTTGACAAGGCTGACTAAACTGAGTCTGGCAAGTAACTATCTGCGTGGAGAAATTCCTGCTGCTATTGCGAATTGTCAAAGCATGCCAA GTTTGGATCTTTCTGCCAATAATCTCAGTGGAAATATTCCCCCACAAGTCATGGCTCTTACTTCTTTGTCAATTCTCATGAACTTGTCTCACAATCATTT CACTGGGGCCATTCCTATCCAAGTGGGAAGACTGAAAAACTTGGGGTCTTTAGATCTCTCTCATAACATGTTATCAGGGAAAATACCAACTAGTCTTGGT AGTTGTGTCAGATTGGAGTCGTTGATGCTGCAAGGAAATCTCCTGCAGGGACATATTCCTCCTTCTTTGAGTTCACTGAGAGGTATTCAGAAATTGGATG TCTCAGGGAACAATCTATCTGGCCAAATTCCCAAGTTCTTTGAGGAATTTCGTGTACTCCAAGTGTTAAACATGTCCTATAATAATTTTGATGGTGAAGT TCCAGGAGGGGGAGCTTTTAATAGTAGCAGTACAATTTCGGTCATTGGGAATGGCGAGCTTTGTGGGGGTAGTGCTGAACTTCACCTTCCTCCATGCAAA TTAAGCCACCACCAGAACAAAAGAACACTGATCCATTCATGGTGGGAAGTTGTCATATCAATAATCTCAGGTCTTCTTTTCTTGGCATTTATAGCTTCAT GCTTGCTCTTATGTCGAATGAGGAAGAGAAGAAGAAGAAAACAGCACAACACAGATTCGTCGGTTGCCAACTGGGAGTTGCAATTATCTTATCAGAAGCT TCACAACGCTACGAATGGCTTCTCCTCGTCAAGTTTGATTGGCGTGGGAAGTTTTGGTTCTGTGTACAAGGCGGTCATTGGAGAAAGCGGGACAACCGTT GCTGTAAAGGTGTTCAACCTTGAGTGCCAAGGAGCTTCCAAGAGTTTCATCGCAGAATGTGAAGCCTTAAGGAATATTAGACACAGAAACCTGATGAAGA TAGTAACTGTTTGCTCGAGTGTAGATTACCACGGGAATGCTTTCAAAGCTGTCATTTATGAATATTTTGCTAATGGTAGCTTGGAAGAGTGGCTTCATCC AGAGGAGAGTAACAATTCTTGTGACTTTCCAAGGAGACTGACTTTTCTCCAGAGACTGAATGTTTCCATTGATGTAGCTTCAGCATTGGATTACCTTCAT CACCAATGCCAAGTACCCTTAGCTCATTGTGATCTGAAGCCAAGTAATATCCTTATCGACAATGACATGACAGCACACATAGGTGATTTTGGGTTGCAAG ATTCCTGA
AA sequence Show only first row Show all	>Lus10038598 pacid=23143153 polypeptide=Lus10038598 locus=Lus10038598.g ID=Lus10038598.BGIv1.0 annot-version=v1.0 MASGKFWVFVAIAVLQFSNCSFSLTAAAAAATAFSSETDRDALLQFKSKISGDPLQVSSSWNDSTPFCEWHGVTCSTRDQRVTALNLPSLKLSGSLSPHI GNLSFLIDLVIYNNSFTKEIPPEIRRLQRLERLGLLNNSFTGEIPSNISSCSALIIFQAAYNRLEGELPWQIGSRNKLQFLVVAGNNLRGKSLPLLMLAA ADNHLTGTIPDALGQLKNLWGLSVEINSLYGEIPLPIFNISTLMDVHFSMNQFHGALPRDLAMQDNEFTGSMSSMWSSRNLTRFFIQNNSLGSGLANDLI FISSLTNATSLVFIDIADNNFGGSIPEQICNLSTTLTTLQLNGNRITGSIPSGIENLVSLYKFEAFQNNLSGIIPSTIGNMKALVLLDLSSNGFTGYVPS SIGNLTRLTKLSLASNYLRGEIPAAIANCQSMPSLDLSANNLSGNIPPQVMALTSLSILMNLSHNHFTGAIPIQVGRLKNLGSLDLSHNMLSGKIPTSLG SCVRLESLMLQGNLLQGHIPPSLSSLRGIQKLDVSGNNLSGQIPKFFEEFRVLQVLNMSYNNFDGEVPGGGAFNSSSTISVIGNGELCGGSAELHLPPCK LSHHQNKRTLIHSWWEVVISIISGLLFLAFIASCLLLCRMRKRRRRKQHNTDSSVANWELQLSYQKLHNATNGFSSSSLIGVGSFGSVYKAVIGESGTTV AVKVFNLECQGASKSFIAECEALRNIRHRNLMKIVTVCSSVDYHGNAFKAVIYEYFANGSLEEWLHPEESNNSCDFPRRLTFLQRLNVSIDVASALDYLH HQCQVPLAHCDLKPSNILIDNDMTAHIGDFGLQDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	0	1
AT1G79190			ARM repeat superfamily protein...		Lus10001243 [exp]	1.4	0.9048
AT3G49990			unknown protein		Lus10015447 [exp]	8.8	0.8357
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	12.3	0.8274
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	14.9	0.8638
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	17.5	0.8552
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	21.2	0.8385
AT5G10370			helicase domain-containing pro...		Lus10012750 [exp]	22.2	0.8099
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	22.3	0.8458
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	22.4	0.8098
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	24.5	0.8096

Compare expression of checked genes

Lus10038598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.